Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01718 ATGGTTCTATCAAATAAGAAGCTTAAACAGAAGCTTAGAGCTGAATTAACCCTAAATCAAATCAAACCTGATTCTGATGCTCCTTCTTCTTCTTCCAACTCTCTCAAACTTCTTCTTCACTCTGAATCCCACAAACCCATTTTGTCCAAGAGAGATAAACTCCGAAAGCTTCGACCTTTGCAACAACAACCTCAACCTCTTCCTTCGCAACCATCCATTGAAGATGAAGGAACCAACAACAAGGAAACTGTGATTGAGGGTTTGGAAAAGAAGAAGGATAAAAAGAGAAAAAGGAAGGTAGAGAAACAGAatgatgatgatgatggtgttgatgCGGCTAATGCTAATGGGGTTGTTGTTAAGGATACCAAATTATCAaagaaaaagaagattttgctgaagcaaaagaagaaaatgcagaagaagaagcagaaggagaagaaaaagttggccaaaactgcagaagaagaaAATCGTCAAAATCATCAAGAGGAGGAAATGCCACAAGCTACAGTGTTGAATAACaccactaccaataccaatactaatatccctatcactaccactatcactaccaGTCAAGAAAATGGTGATGTTGCAACAAAAGTTTATGTTGGAGGAATTCCTTACTATTCAACTGAGGATGACATTCAAAGTTATTTTGAAGGTTGTGGCACCATCACTGACATTCATTGCATGACTTTTCCAGACACTGGCAAATTTAAAGGGATTGCAATCATTAGTTTTAAGACTGAAGCAGCGGCCAAACGAGCATTGGCTTTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCGTATAAAGCAACTCAAGCAACTCGATTTACGCCGCAAATGATGGAAGGATACAATAGAATATACGTTGGAAGTTTATCATGGGAAATAACAGAGGAAGAACTAAGGAAATTCTTTTCAAATTGCAATATAGCGTCCATACGATTTGGTATGGACAAGGAAACGGGAGAATTCCGGGGGTATGCTCACGTGGATTTCAGTGATAGCCAGTCACTGAAGACAGCACTTAAATTAGACCAAAGTGTCTTGTTTGGAAGGTCTGTCAGAATAAGCTGTGCAGTTCCTTTGAAGAAAAAACCAAATGCGGGCGAAAAACCAGATGCAGGAGAAACATCAAATGGAGGTGAAAAACTAGGTGCCGTAGAAAAACCAGTTGCGGTAGAAACACCAGCTGCGATAGAAACACCAGCTGCGGTAGAAACACTGGTTGAGGAAGTTGTGAAACCAAGTTCCTTGGGAAGTGGCAAGAGGAAGAATAGGATGTGCTACGGGTGTCGTCAGAAAGGACATAATCTTTCAGAATGCCCTAACAATCAAACAGGCGCATCTACTCCAATCTAA 1383 0.3586 MVLSNKKLKQKLRAELTLNQIKPDSDAPSSSSNSLKLLLHSESHKPILSKRDKLRKLRPLQQQPQPLPSQPSIEDEGTNNKETVIEGLEKKKDKKRKRKVEKQNDDDDGVDAANANGVVVKDTKLSKKKKILLKQKKKMQKKKQKEKKKLAKTAEEENRQNHQEEEMPQATVLNNTTTNTNTNIPITTTITTSQENGDVATKVYVGGIPYYSTEDDIQSYFEGCGTITDIHCMTFPDTGKFKGIAIISFKTEAAAKRALAFDGADMGGLFLKIQPYKATQATRFTPQMMEGYNRIYVGSLSWEITEEELRKFFSNCNIASIRFGMDKETGEFRGYAHVDFSDSQSLKTALKLDQSVLFGRSVRISCAVPLKKKPNAGEKPDAGETSNGGEKLGAVEKPVAVETPAAIETPAAVETLVEEVVKPSSLGSGKRKNRMCYGCRQKGHNLSECPNNQTGASTPI 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01718 460 SMART rrm1_1 202 274 IPR000504 GO:0003723
Car04g01718 460 SMART rrm1_1 294 365 IPR000504 GO:0003723
Car04g01718 460 Coils Coil 85 105 - -
Car04g01718 460 CDD RRM2_PHIP1 294 365 IPR034362 -
Car04g01718 460 CDD RRM1_PHIP1 203 274 IPR034361 -
Car04g01718 460 Gene3D - 120 282 IPR012677 -
Car04g01718 460 MobiDBLite consensus disorder prediction 19 113 - -
Car04g01718 460 MobiDBLite consensus disorder prediction 133 167 - -
Car04g01718 460 SUPERFAMILY RNA-binding domain, RBD 184 286 IPR035979 GO:0003676
Car04g01718 460 MobiDBLite consensus disorder prediction 373 393 - -
Car04g01718 460 MobiDBLite consensus disorder prediction 22 39 - -
Car04g01718 460 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 71 455 - -
Car04g01718 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 278 IPR000504 GO:0003723
Car04g01718 460 MobiDBLite consensus disorder prediction 133 148 - -
Car04g01718 460 Gene3D - 283 376 IPR012677 -
Car04g01718 460 MobiDBLite consensus disorder prediction 149 164 - -
Car04g01718 460 ProSiteProfiles Zinc finger CCHC-type profile. 436 451 IPR001878 GO:0003676|GO:0008270
Car04g01718 460 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 71 455 - -
Car04g01718 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 269 IPR000504 GO:0003723
Car04g01718 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 362 IPR000504 GO:0003723
Car04g01718 460 Coils Coil 129 167 - -
Car04g01718 460 SUPERFAMILY Retrovirus zinc finger-like domains 428 455 IPR036875 GO:0003676|GO:0008270
Car04g01718 460 SUPERFAMILY RNA-binding domain, RBD 286 377 IPR035979 GO:0003676
Car04g01718 460 MobiDBLite consensus disorder prediction 43 58 - -
Car04g01718 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 369 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01718 Car-Chr4 17759451 17762584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01718 295 365 Eukaryotic Initiation Factors Gene Family AT2G23350 32.877 3.34e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01718 - - mtr:MTR_1g115375 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01718 04 17759451 17762584 Car04g01718 04 17759451 17762584 ECH