Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01715 ATGATGAAGAGAGAAAGAGAAGGTGAAAATATTAACATCACATCCATGGCTAAATATTTGATGTTACTTTCTCATGGAAGTGAATTTGATCATGAAAAAAATTACTCTTCAAATTTGAACAACCGTGTGTTTGAGTGCAAGACATGTAAAAGACAATTTTCGTCGTTTCAAGCATTGGGAGGACACCGTGCGAGTCACAAGAAACCGAGGTTGATGGAGATCACGAGTAGTGATGATCAAGTGCTTCATCATGATTCAATAGTTGCAACAACAACAACAAAAGTTAAAACTCATGAATGTTCAATTTGTGGATTGGAATTTGCAATAGGACAAGCTTTAGGTGGTCACATGAGAAGACATAGAAGAAAAGAACAAAGAGCTAATAATTCAAATGAAAATATGCACACTTTTATGACAAAtactagtaatagtagtagtagtggttgcagcactattgataatactaATTCAGAGAATATGAAAAAGGGGAACACCAAGAGATTTTTGTTTTTGGATTTGAATTTGACTCCTTTAGAGAATGATTTGAAGTTTTTGAAGATTGGACAATCAACTCTTAATTTGGTGGATTGTTTCAATTAA 600 0.31 MMKREREGENINITSMAKYLMLLSHGSEFDHEKNYSSNLNNRVFECKTCKRQFSSFQALGGHRASHKKPRLMEITSSDDQVLHHDSIVATTTTKVKTHECSICGLEFAIGQALGGHMRRHRRKEQRANNSNENMHTFMTNTSNSSSSGCSTIDNTNSENMKKGNTKRFLFLDLNLTPLENDLKFLKIGQSTLNLVDCFN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01715 199 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Car04g01715 199 MobiDBLite consensus disorder prediction 130 158 - -
Car04g01715 199 PANTHER ZINC FINGER PROTEIN ZAT12 15 185 - -
Car04g01715 199 Gene3D Classic Zinc Finger 42 120 - -
Car04g01715 199 SUPERFAMILY beta-beta-alpha zinc fingers 42 120 IPR036236 -
Car04g01715 199 MobiDBLite consensus disorder prediction 122 158 - -
Car04g01715 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Car04g01715 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Car04g01715 199 PANTHER ZINC FINGER PROTEIN ZAT5 15 185 - -
Car04g01715 199 SMART c2h2final6 98 120 IPR013087 -
Car04g01715 199 SMART c2h2final6 44 66 IPR013087 -
Car04g01715 199 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Car04g01715 199 Pfam C2H2-type zinc finger 43 69 - -
Car04g01715 199 Pfam C2H2-type zinc finger 98 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01715 Car-Chr4 17741886 17742883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01715 2 196 C2H2 Transcription Factor Family AT2G37430 39.409 2.53e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g01715 zf-C2H2_6 8.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01715 - - gmx:100816598 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01715 04 17741886 17742883 Car04g01715 04 17741886 17742883 ECH