Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01708 ATGTATTGTTTTATGGTTTGTAAATCTCGCATGTGGATATTGACAATTGTGTTCTACACATGTGTTTTAATCCCATTGATGCAACTCAAGATGTCACTTGCAAACATGTTTGGCGTAATTCTCATGTTTTTGTTCTCTTGTGAAACCAAATGTATAGCCAAGGAGATGGAATTTCCAGAAATTTCATCCCTACCCGTGGCGCGATTCAACGATTTGAGAGGACATGGAggtgatggtgatggtgatggtgatgAGATTTGTTCCATTTGCTTGGTGGAATTTGAGGGGGGAAATGCAGTGAGCAAGTTGAGGAGATGTGGGCATGTGTTTCATTTCAATTGTATTGAACAATGGCTAGAACGAAATCAATTCTCTTGTCCACTTTGTAGGTCTTTTTTATTTTCCTAA 408 0.3578 MYCFMVCKSRMWILTIVFYTCVLIPLMQLKMSLANMFGVILMFLFSCETKCIAKEMEFPEISSLPVARFNDLRGHGGDGDGDGDEICSICLVEFEGGNAVSKLRRCGHVFHFNCIEQWLERNQFSCPLCRSFLFS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01708 135 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 134 - -
Car04g01708 135 SMART ring_2 87 129 IPR001841 -
Car04g01708 135 ProSiteProfiles Zinc finger RING-type profile. 87 130 IPR001841 -
Car04g01708 135 Pfam Ring finger domain 87 130 IPR001841 -
Car04g01708 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 133 IPR013083 -
Car04g01708 135 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 134 - -
Car04g01708 135 SUPERFAMILY RING/U-box 86 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01708 Car-Chr4 17682258 17683176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01708 8 135 C3H Transcription Factor Family AT4G38140 35.938 3.89e-21 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01708 - - pvu:PHAVU_007G012000g 166.007