Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01702 ATGGCAACGAAAGGTACGAAAAGGGTTGATGCCGTCGATTCTCGTGCTGCTTCCGTTCTTGTTCGTGCCAAAGATGGCAGCGCCTTCGCTCGATGTGCTGAGTGCAAAAAGGATGTGCCGGTTGCACTCATTGACATGCATAGTTGTAGCCTAGAAGCCAAAATCAAAATGAACCTTGATGCTCAGGTTGTTGAGCAAGCTGCTGAAGTGAAGAAACCTGAGAGGAAGAAGCCGAAATCGAAAGAACCAAGTGCAAAAAGGGCTAAAGTTGGGAAAGAGAAGAAGATTAAAGATCCTAACATGCCCAAGCGTCCTCCCACTGCTTTCtttgtcttcatGGATGATTTTAGAAAAACGTTTAAGGAAGCTAACCCTGATTCAAAGGATGTTAAGAGGGTTGGTAAAGAGGCTGGTGAGAAATGGAGGGCTATGACTGATGAAGAGAAGAAACCTTATTTGGATAGGGTTGTTGAACTCAAGGCAGAGTATGAGAAGGCTATGGAAACCTATAATGCTGCTGAAAATGTAGACCAAGAAGCATCTGATGAAAAGTCTGATAAGGAAGCCCCTGCAACAGGAGAGATGGAAGAGTTGACTGATGAGGAGTAG 609 0.4417 MATKGTKRVDAVDSRAASVLVRAKDGSAFARCAECKKDVPVALIDMHSCSLEAKIKMNLDAQVVEQAAEVKKPERKKPKSKEPSAKRAKVGKEKKIKDPNMPKRPPTAFFVFMDDFRKTFKEANPDSKDVKRVGKEAGEKWRAMTDEEKKPYLDRVVELKAEYEKAMETYNAAENVDQEASDEKSDKEAPATGEMEELTDEE 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01702 202 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 189 - -
Car04g01702 202 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 189 - -
Car04g01702 202 Gene3D High mobility group box domain 84 187 IPR036910 -
Car04g01702 202 SMART hmgende2 101 172 IPR009071 -
Car04g01702 202 MobiDBLite consensus disorder prediction 170 202 - -
Car04g01702 202 MobiDBLite consensus disorder prediction 177 194 - -
Car04g01702 202 MobiDBLite consensus disorder prediction 67 101 - -
Car04g01702 202 CDD HMGB-UBF_HMG-box 102 168 - -
Car04g01702 202 Coils Coil 153 176 - -
Car04g01702 202 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Car04g01702 202 SUPERFAMILY HMG-box 89 171 IPR036910 -
Car04g01702 202 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Car04g01702 202 MobiDBLite consensus disorder prediction 66 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01702 Car-Chr4 17609415 17611000 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Car04g01702 HMG_box 8.9e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01702 K25507 - gmx:100810345 296.975