Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01701 ATGCTTGATAATGTGGATCATGTTCATCATTTCATCGACTCAACTTGGAGACTTTGTTCTCTTCTAGGTGGTTGGGTTTCTGGTCTAATTTCAAAACCTTACAGAAAAGTGGTTGGCTCAGCATTTGATGGTTCTCTTTCTAGGTTGGCCGACGAAAGAGAAAATTATTATTTAGATTCCATGGATCAGCAGTGTATATATATTAGTTCATCGGATGATGAGTTGGAGGAGATAATAGATCCGGGGAGGGTTCTCCCACAATGGGCTGCTTCTGAAAGGAATTCAGCTAGTTCTTCAAGGAGGGCAAATAATTCAAACACGGGTACTTCTAATGCTTTTGATAATTCACAAGCTAAGCTCCATAATCAATTTGCGTCCAGCAAGAATACAGTAAACCACAGAATACCACAGAGAGGCGAACCTTCTTATCATGCCCAGAATGGAAATACAAGTCAGCATCCGACAATAAATTCCCGAATTTCTAATACTTATGGTGCCGATTATGAGAAAATGTCATCTCAACAAGCTTTGAAGAGGACCCTTCCATCATCTTTTCAATCATCTGCAACAAGGGCTCTTCCACCTTCGTCATTTGCACCTAATAACAGATTAAGCAGCTTGAGCAGCAGTCAGCTTCATGATGCACATAGGAATCGTCACCATGGAGTAGGACCTAGCACGTCCAGTGAGAAGGGCTATTTTCGTGACAATTTTAGCAGAGGCAATGATGGAGATCGTTTCATGCATCAGAATGGTGGGATTAGGGCTCTTCCTCCATCTTTGATGCTCGGAAAGGCTATAACTCCACCATTTGCTAGTTCTAGTGAATCTGCATACCGTTCTGGAGCAGGTGATGAAAGGGCTTCTGGGAATGATGAGAGACTAATTTATGAAGCAGCATTACAGGATATCAGTCAACCATTAAAAGAAGCAGACTTACCTGCTGGCCTAATGTCTGTATCTCTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACTATTTCAACAATTGCTCTCATCCTAATGCAAAGGCCATTGCAGTCAAAATGGAAAACAGATGATATATGCAACCATAAAGCTGAAGCCTTGAATTTGGATGACGATGATGATAATGGTGGTATTGATGTGGAAAAGCTTAAAAAGGACGAAGAATCTGACGATATAAAACCTGTTACTGAACCGAGTAGTTCAACACGGGCACCCAGTAGGAAAAGGCCAGCTGCTGGTACATTGGTTGTCTGCCCGGCAAGTGTTCTTCGGCAGTGGGCCAGAGAGCTTGATGAGAAAGTTGGAGATGAAAAGCTTTCTGTTTTAATTTTTCATGGGGGCAGTAGGACTAAGGATCCTATTGAACTTGCAAAATTTGATGTGGTTCTCACAACTTACTCTCTGGTGACTAATGAAGTTCCAAAGCAACCGTTAGTTGAGGATGACGATATTGATGAAAAAGACGGGGAAATGTTTGGCTTATCCTCCGAGTTTTCGGCTGGTAAAAAACGAAAAAAGTTATATAACGGAAGCAAGAAGAGTAAAAAAGGTCGAAAGGGAATAGACAGTTCTTCTGTTGATTGTGGTTCAGGTGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCCCAAACAATAAAGAATCATAGAACTCAGATGGCCAGAGCTTGCTGCAGCCTTAGGGCCAAAAGAAGGTGGTGCTTGTCTGGCACACCTATTCAGAATACCATCGATGATTTATATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCATTCTACCATACAATAAAAGTCCAAATATCCAGAAATTCCATTCAAGGTTACAAAAAACTTCAAGCAATTCTGAGGGCCATAATGCTACGTCGCACAAAAGGAACTTTGCTTGATGGCAAGCCGATAATCACTTTACCTCCTAAAACAATTAATCTGAATAAGGTTGATTTCTCCTTTGAGGAGCGGGCCTTCTACAAGAAGTTGGAATCAGACTCACGTTCTCAGTTTAAGGCATATGCAGCTGCTGGCACAGTTAATCAAAACTATGCAAATATTCTTTTGATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATATAATTCTGATCCTATTGGCAAAGATTCTGTTGAAATGGCAAAAAAGCTTCCAAGGGAGATGCTGATCAATCTGTTTAATAATCTAGAAACAACTTTCGCTATATGTTGTGTATGCAATGATCCACCTGATGACGCTGTTATTACGATGTGTGGCCATGTCTTCTGTTACCAATGCATATCAGAACATTTGACAGGTGATGATAATATGTGCCCCGCTGTTCATTGTAAAGAACAAATTGGGGATGATGTTGTTTTCTCCAAAGCAACTCTGAGGAGTTGCATCTCTGACGATCTTGGTGGCAGTAGTTCTGGAAATTCAAATCTTATTGATTATTCACTAGTACAGAACAGTGACTACAGCTCATCTAAAATAAAAGCTGTCCTTGAGGTTCTGCAGTCAAATTGTAAATTGGAGACTCCTTCTGGCTTACTGAATTCGTCTGAAGGCAATAGAGATTCACCGCATTCTGATAATTCATATGTTGAAGATTGTGATTCTGATGTCAGGGTTATAAAACACACAAGAAAATTTTCGGCGGCCAGAACTGAAGGACCGATGAAGGCTATAATTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTTGAGACATCAGTGGAACAATCTGGTATAAAATACAGGAGACTTGATGGTCGGATGACACTGAGTGCGAGGGACAAAGCTGTTAAGGATTTCAATACTGATCCCGAGATTACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACACGCCCTGTTACTGTGACGAGGATCACCATAAAAGATACCGTTGAAGATAGAATACTGGCTCTTCAGGAAGAAAAGAGAAAAATGGTGGCATCTGCTTTTGGTGAAGACCATGCTGGCAGTTCTGGAACTCGGCTTACAGTTGATGATCTGAAATATCTTTTCATGGTCTAG 3219 0.4101 MLDNVDHVHHFIDSTWRLCSLLGGWVSGLISKPYRKVVGSAFDGSLSRLADERENYYLDSMDQQCIYISSSDDELEEIIDPGRVLPQWAASERNSASSSRRANNSNTGTSNAFDNSQAKLHNQFASSKNTVNHRIPQRGEPSYHAQNGNTSQHPTINSRISNTYGADYEKMSSQQALKRTLPSSFQSSATRALPPSSFAPNNRLSSLSSSQLHDAHRNRHHGVGPSTSSEKGYFRDNFSRGNDGDRFMHQNGGIRALPPSLMLGKAITPPFASSSESAYRSGAGDERASGNDERLIYEAALQDISQPLKEADLPAGLMSVSLMRHQKIALAWMLQRENRSLHCLGGILADDQGLGKTISTIALILMQRPLQSKWKTDDICNHKAEALNLDDDDDNGGIDVEKLKKDEESDDIKPVTEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLIFHGGSRTKDPIELAKFDVVLTTYSLVTNEVPKQPLVEDDDIDEKDGEMFGLSSEFSAGKKRKKLYNGSKKSKKGRKGIDSSSVDCGSGALAKVGWFRVILDEAQTIKNHRTQMARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYHTIKVQISRNSIQGYKKLQAILRAIMLRRTKGTLLDGKPIITLPPKTINLNKVDFSFEERAFYKKLESDSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPIGKDSVEMAKKLPREMLINLFNNLETTFAICCVCNDPPDDAVITMCGHVFCYQCISEHLTGDDNMCPAVHCKEQIGDDVVFSKATLRSCISDDLGGSSSGNSNLIDYSLVQNSDYSSSKIKAVLEVLQSNCKLETPSGLLNSSEGNRDSPHSDNSYVEDCDSDVRVIKHTRKFSAARTEGPMKAIIFSQWTSMLDLVETSVEQSGIKYRRLDGRMTLSARDKAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGSSGTRLTVDDLKYLFMV 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01701 1072 SMART ultradead3 318 628 IPR014001 -
Car04g01701 1072 Pfam Helicase conserved C-terminal domain 914 1014 IPR001650 -
Car04g01701 1072 ProSitePatterns Zinc finger RING-type signature. 782 791 IPR017907 -
Car04g01701 1072 MobiDBLite consensus disorder prediction 133 246 - -
Car04g01701 1072 MobiDBLite consensus disorder prediction 90 115 - -
Car04g01701 1072 Pfam SNF2-related domain 325 728 IPR000330 GO:0005524|GO:0140658
Car04g01701 1072 MobiDBLite consensus disorder prediction 133 212 - -
Car04g01701 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 660 1071 IPR027417 -
Car04g01701 1072 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 113 1071 - -
Car04g01701 1072 MobiDBLite consensus disorder prediction 390 431 - -
Car04g01701 1072 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 904 1067 IPR001650 -
Car04g01701 1072 ProSiteProfiles Zinc finger RING-type profile. 767 803 IPR001841 -
Car04g01701 1072 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 742 830 IPR013083 -
Car04g01701 1072 CDD SF2_C_SNF 915 1023 - -
Car04g01701 1072 Pfam Zinc finger, C3HC4 type (RING finger) 767 803 IPR018957 GO:0046872
Car04g01701 1072 SUPERFAMILY RING/U-box 764 816 - -
Car04g01701 1072 MobiDBLite consensus disorder prediction 89 115 - -
Car04g01701 1072 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 337 613 IPR014001 -
Car04g01701 1072 Gene3D - 666 1071 IPR027417 -
Car04g01701 1072 Gene3D - 520 664 IPR038718 -
Car04g01701 1072 Gene3D - 298 383 IPR038718 -
Car04g01701 1072 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 113 1071 - -
Car04g01701 1072 SMART helicmild6 931 1014 IPR001650 -
Car04g01701 1072 CDD DEXDc_SHPRH-like 322 651 - -
Car04g01701 1072 Gene3D - 418 504 IPR038718 -
Car04g01701 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 651 IPR027417 -
Car04g01701 1072 SMART ring_2 767 805 IPR001841 -
Car04g01701 1072 MobiDBLite consensus disorder prediction 397 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01701 Car-Chr4 17582756 17593604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01701 61 972 RAD5 or RAD16-like Gene Family AT1G50410 55.342 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car04g01701 SNF2_N 7.5e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01701 - - gmx:100811598 1586.24