Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01691 ATGTCGGAAGCACCGTCTCAACCACCACTCCCCGCCACCGACTCTCCACCTCCATACTGGTGTTACCACTGCGACAAACGCGTCTCCGTCGAAACTGTCGCAAATCTCCCCGACGTCATCTGCGGCGAGTGCAAAAACGGCTTCGTCGAATCCATctctacaccttctcgttctcgttctccttcctcttcctctGATGACCCTAACTTTGGTTCTCAGTTCCTCCAGGTTCTTCGCTTAATCGCTCAATCGTCGCGTGATGACGACGCGTCTCCACCCCCTCCTCCAACTCGTTCCCCTGAGAACGATTTCCTCAGAATCGAACTCGGTGGTTGGgaccacaacgacgaagaaaacgacgacgacgagtttcacaacaacgacggcgaagatcacgaAGGTACCGTCGAGGAACAGGAAGATCGATCCGGAAACGACGATTCGCACTGGGATGAAGAAGATATGAGGCGAAGGAGACGCGATCTGTTGCGTCTTCGAATTAGGGATTTAGCGACCCGAACCCGAAGCATGCAGAATCGGATCTTGGATTGGGCCGAGATTCTAATGGGCCTGGAAGACAATTCAATTGAGTTTCGTCTTCAGGCACCGGAATCGGACCGGTACGTCGGAAATCCAGAGGATTATGTTGATGCGGCGGAGTATGAGGCGTTGTTGCAGACGCTGGCGGAGAGTGATGGAAGTGGAAGGGGAGGAGCTCCGCCGGCGTCAAAGTCGGCTGTGGAAGCGTTGCCGACTGTGAAGATCGTGTCGGAGAGTGAGGTTGTTGGTTGTGCTGTGTGTAAGGATATGATTGGTGTTGGAGAAATGGCGAAGAGATTGCCGTGTGGACATGAGTATCATGGTGATTGTATTGTTCCATGGTTGAGTAGTAGAAATTCTTGCCCTGTTTGCAGGTTTGAGCTTCCAACGGATGATAAGGAGTATGAAGAAGAGAGAGCTTCGTGTTCGGGTTCtggtcgtggtggtggtggtggtggAGCAGGAGCTTCCACCACCATGTGA 1023 0.4624 MSEAPSQPPLPATDSPPPYWCYHCDKRVSVETVANLPDVICGECKNGFVESISTPSRSRSPSSSSDDPNFGSQFLQVLRLIAQSSRDDDASPPPPPTRSPENDFLRIELGGWDHNDEENDDDEFHNNDGEDHEGTVEEQEDRSGNDDSHWDEEDMRRRRRDLLRLRIRDLATRTRSMQNRILDWAEILMGLEDNSIEFRLQAPESDRYVGNPEDYVDAAEYEALLQTLAESDGSGRGGAPPASKSAVEALPTVKIVSESEVVGCAVCKDMIGVGEMAKRLPCGHEYHGDCIVPWLSSRNSCPVCRFELPTDDKEYEEERASCSGSGRGGGGGGAGASTTM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01691 340 Pfam Zinc finger, C3HC4 type (RING finger) 264 304 - -
Car04g01691 340 ProSiteProfiles Zinc finger RING-type profile. 264 305 IPR001841 -
Car04g01691 340 MobiDBLite consensus disorder prediction 128 154 - -
Car04g01691 340 SMART ring_2 264 304 IPR001841 -
Car04g01691 340 SUPERFAMILY RING/U-box 253 311 - -
Car04g01691 340 MobiDBLite consensus disorder prediction 111 154 - -
Car04g01691 340 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 33 321 - -
Car04g01691 340 MobiDBLite consensus disorder prediction 50 74 - -
Car04g01691 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 311 IPR013083 -
Car04g01691 340 MobiDBLite consensus disorder prediction 317 340 - -
Car04g01691 340 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 33 321 - -
Car04g01691 340 Pfam zinc-ribbon 19 52 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01691 Car-Chr4 17523630 17525150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01691 175 317 C3H Transcription Factor Family AT5G01980 48.667 2.78e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01691 - - gmx:100780991 464.536