Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car04g01678 | ATGTCTTCCGGCGGAGACGGCGGCGGTGGTGGTAAGCTTTTCTTCTGCCACGTGTGCAGTCGGAGAGTTACTTGCTCAGATGATTCCGAACCTTTCTGCCCAATTTGCCTCCAAGGTTTCGTTGAAGAATATGTTCCCAATCCCGAACCTAACCCTAGCCCTAGCTTCACTTTCAGCTTTAACCAAGATCCTTCCTCCGATTCCGATTTTCCCCTCCACCCCTTATCTCTTCTCCCTCTATTGCTATCCTCTGCTTCGATATCTAGGACCCGACCCGAATCCGATAATTTCGACCCGTTCGTTTTCCTTCAGAATCACCTTCATGACCTTCACGCCGACGGAGCCAACATTCAATTCGAGATCAATCATCCTTCCGAAACCGGAACCGAACCAGGGTTTCGAATCCCATCCAACATCGGCGATTACTTCCTCGGTCCTGGACTCGAGCAATTGATTCAGCAGCTCGCCGAGAATGATCCTAACCGTTATGGAACACCGCCGGCGTCGAAAGACGCCGTTCAGAAGCTTCCGACTGTTACTGTCGACGATGAGTTGTTGAACTCGGAGTTGAACCAGTGTGCTGTTTGTCAGGATGAGTTTGAGAAGGGTTCGCAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCATGATGAGTGTTTGCTTCCATGGCTTCAATTGCATAACTCTTGTCCTGTGTGTCGATATGAATTGCCAACTGATGATGCTGATTATGAGAATCGGGCGAGGGGGGAtggtggtgatgggttgaggtctgttgttgatggtaatggtagtggtggtggaggAAATAGACCGGTTCATAGGACTTTTAGAATATCTTTGCGGTATCCTTTTGGTGGAGGTGAATATGCTCAGGACTCTGGTGAAAGGGGATCGGGAAATAGGCAAGAAGATTTGGATTGA | 924 | 0.4578 | MSSGGDGGGGGKLFFCHVCSRRVTCSDDSEPFCPICLQGFVEEYVPNPEPNPSPSFTFSFNQDPSSDSDFPLHPLSLLPLLLSSASISRTRPESDNFDPFVFLQNHLHDLHADGANIQFEINHPSETGTEPGFRIPSNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKDAVQKLPTVTVDDELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHDECLLPWLQLHNSCPVCRYELPTDDADYENRARGDGGDGLRSVVDGNGSGGGGNRPVHRTFRISLRYPFGGGEYAQDSGERGSGNRQEDLD | 307 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car04g01678 | 307 | SMART | ring_2 | 193 | 233 | IPR001841 | - | |
Car04g01678 | 307 | Pfam | Ring finger domain | 191 | 234 | IPR001841 | - | |
Car04g01678 | 307 | ProSiteProfiles | Zinc finger RING-type profile. | 193 | 234 | IPR001841 | - | |
Car04g01678 | 307 | Pfam | zinc-ribbon | 14 | 44 | IPR039525 | GO:0061630 | |
Car04g01678 | 307 | PANTHER | OS06G0101300 PROTEIN | 11 | 290 | - | - | |
Car04g01678 | 307 | CDD | RING-H2_RNF126_like | 192 | 234 | - | - | |
Car04g01678 | 307 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 240 | IPR013083 | - | |
Car04g01678 | 307 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 11 | 290 | - | - | |
Car04g01678 | 307 | MobiDBLite | consensus disorder prediction | 287 | 307 | - | - | |
Car04g01678 | 307 | SUPERFAMILY | RING/U-box | 172 | 240 | - | - | |
Car04g01678 | 307 | MobiDBLite | consensus disorder prediction | 246 | 274 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Car04g01678 | Car-Chr4 | 17390151 | 17392840 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Car04g01678 | 137 | 249 | C3H Transcription Factor Family | AT5G01980 | 47.788 | 4.12e-32 | 122 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car04g01678 | K11982 | - | gmx:100785289 | 375.17 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Car04g01678 | 04 | 17390151 | 17392840 | Car04g01678 | 04 | 17390151 | 17392840 | ECH |