Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01678 ATGTCTTCCGGCGGAGACGGCGGCGGTGGTGGTAAGCTTTTCTTCTGCCACGTGTGCAGTCGGAGAGTTACTTGCTCAGATGATTCCGAACCTTTCTGCCCAATTTGCCTCCAAGGTTTCGTTGAAGAATATGTTCCCAATCCCGAACCTAACCCTAGCCCTAGCTTCACTTTCAGCTTTAACCAAGATCCTTCCTCCGATTCCGATTTTCCCCTCCACCCCTTATCTCTTCTCCCTCTATTGCTATCCTCTGCTTCGATATCTAGGACCCGACCCGAATCCGATAATTTCGACCCGTTCGTTTTCCTTCAGAATCACCTTCATGACCTTCACGCCGACGGAGCCAACATTCAATTCGAGATCAATCATCCTTCCGAAACCGGAACCGAACCAGGGTTTCGAATCCCATCCAACATCGGCGATTACTTCCTCGGTCCTGGACTCGAGCAATTGATTCAGCAGCTCGCCGAGAATGATCCTAACCGTTATGGAACACCGCCGGCGTCGAAAGACGCCGTTCAGAAGCTTCCGACTGTTACTGTCGACGATGAGTTGTTGAACTCGGAGTTGAACCAGTGTGCTGTTTGTCAGGATGAGTTTGAGAAGGGTTCGCAGGTGAAGCAAATGCCTTGTAAGCATGTTTATCATGATGAGTGTTTGCTTCCATGGCTTCAATTGCATAACTCTTGTCCTGTGTGTCGATATGAATTGCCAACTGATGATGCTGATTATGAGAATCGGGCGAGGGGGGAtggtggtgatgggttgaggtctgttgttgatggtaatggtagtggtggtggaggAAATAGACCGGTTCATAGGACTTTTAGAATATCTTTGCGGTATCCTTTTGGTGGAGGTGAATATGCTCAGGACTCTGGTGAAAGGGGATCGGGAAATAGGCAAGAAGATTTGGATTGA 924 0.4578 MSSGGDGGGGGKLFFCHVCSRRVTCSDDSEPFCPICLQGFVEEYVPNPEPNPSPSFTFSFNQDPSSDSDFPLHPLSLLPLLLSSASISRTRPESDNFDPFVFLQNHLHDLHADGANIQFEINHPSETGTEPGFRIPSNIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKDAVQKLPTVTVDDELLNSELNQCAVCQDEFEKGSQVKQMPCKHVYHDECLLPWLQLHNSCPVCRYELPTDDADYENRARGDGGDGLRSVVDGNGSGGGGNRPVHRTFRISLRYPFGGGEYAQDSGERGSGNRQEDLD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01678 307 SMART ring_2 193 233 IPR001841 -
Car04g01678 307 Pfam Ring finger domain 191 234 IPR001841 -
Car04g01678 307 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Car04g01678 307 Pfam zinc-ribbon 14 44 IPR039525 GO:0061630
Car04g01678 307 PANTHER OS06G0101300 PROTEIN 11 290 - -
Car04g01678 307 CDD RING-H2_RNF126_like 192 234 - -
Car04g01678 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 240 IPR013083 -
Car04g01678 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 11 290 - -
Car04g01678 307 MobiDBLite consensus disorder prediction 287 307 - -
Car04g01678 307 SUPERFAMILY RING/U-box 172 240 - -
Car04g01678 307 MobiDBLite consensus disorder prediction 246 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01678 Car-Chr4 17390151 17392840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01678 137 249 C3H Transcription Factor Family AT5G01980 47.788 4.12e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01678 K11982 - gmx:100785289 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01678 04 17390151 17392840 Car04g01678 04 17390151 17392840 ECH