Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01671 ATGGAGAACGACACCACCACCAACACCAACAACGTCACGGCCAAAGTATCTTCTGGAGGAGTCAAATCCAACAATCACATCCATCAAGAAGAAgaagttgaacattccaatttcaattcgaatttgaatGGCGAGGAAAATATGCCAGAAAAAATTGaagaaaaagaagaacaagaacaacaacaacacgaacaacCTACTGGATCTGAAACCACCACTCACCAACCTTCCAGAACCCCTTTCACTAATCTCAGCCAGGTTGATGCTGACCTTGCCCTAGCCCGAACCCTACAAGAGCAGGAAAGGGCATACatgatgctgagaatgaataatgacggaagtgactatggaagttgggaaggtggtagctatttgcatgatgatggagatgattttgatgatctacatgatggcactgatgtggatgaggatgatgatgaagatgatgataacgaggatgaatatgagaatgaagatgcatttgatgtccatgctcatgctagtgctggagaacatgataatCCCATCATTGAATTTGACCCAGAGCTGTTTTCAAGTGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGTTGGCTCTTGCTGGGATAAATGATCAGGAGACCGAGGACATGGAGGAACATGGTGCTAACTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTATTGGCATTGGGCGAGGTAGTAGGAACTGAAAGCAGAGGTCTTTCGACTGATACTATTGCCTGTCTACCTTCTGTCAACTACAAGACCGGGAGTGATCAACATGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGATGAGTCCTTGACAGTTCTTTCCTGCAAACATTTGTACCATCCTGAGTGCATTAACAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTGCTTCCTCCGGTAGCAACTTGTAG 1011 0.3373 MENDTTTNTNNVTAKVSSGGVKSNNHIHQEEEVEHSNFNSNLNGEENMPEKIEEKEEQEQQQHEQPTGSETTTHQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEDDDEDDDNEDEYENEDAFDVHAHASAGEHDNPIIEFDPELFSSDEAYARALQEAEEREMAARLLALAGINDQETEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSVNYKTGSDQHGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASSGSNL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01671 336 SMART ring_2 284 324 IPR001841 -
Car04g01671 336 MobiDBLite consensus disorder prediction 114 156 - -
Car04g01671 336 CDD RING-H2_PA-TM-RING 284 324 - -
Car04g01671 336 MobiDBLite consensus disorder prediction 47 63 - -
Car04g01671 336 ProSiteProfiles Zinc finger RING-type profile. 284 325 IPR001841 -
Car04g01671 336 SUPERFAMILY RING/U-box 275 330 - -
Car04g01671 336 MobiDBLite consensus disorder prediction 1 87 - -
Car04g01671 336 MobiDBLite consensus disorder prediction 1 24 - -
Car04g01671 336 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 30 332 IPR043312 -
Car04g01671 336 MobiDBLite consensus disorder prediction 133 156 - -
Car04g01671 336 Pfam Ring finger domain 282 324 IPR001841 -
Car04g01671 336 MobiDBLite consensus disorder prediction 64 86 - -
Car04g01671 336 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 30 332 - -
Car04g01671 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 331 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01671 Car-Chr4 17324646 17330226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01671 77 228 C3H Transcription Factor Family AT3G19910 54.902 3.16e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01671 K19045 - gmx:100787418 459.529