Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01648 ATGGACTTTGATGAGTATGAATATTTAGAGAAAACTGTTGAAAATTCTGAATTTAAGAACCAGAAAGAAACCACTAATGGTGGTGATAGGACTGTGAAATCTGAAGATAGAGGACGTAGTAGAAGCTCAAAACATAAGGATAGTGAGAAGGATGATGGTGATGTTGATCACTGTTTAAAGCAATCGAAATCCGGAGATGTTTCTCGTGGTTATGACAGGCAGAAAGAAAGAGGCTCATCACGTCGTCGTTCACGGTCCAGAGATGGAGATAAGGAGAAGGATCAGCACAGAAGCTCTCGGGGGAATAAGgataggaagagtgatagggacagagacagtgaagacaagtacagaagggagagagatagagaccaggacctggaaagagacagaAGGAATCGAGGGAGTGAGAGTGAAAAAGAAAAAGAGCGCTCTCGGCGAAGCGAAAGTAGATTGCGCAGGCATCAAAGTGATTTGGATAACAAAGACAGAGAGATAAGTCGTGACAGGGAATATAGAGAGAGGGAAAGAAGCCGAGATAAGGATTTCAGAGACAGAGGAATGGCAAGGGACTTGAAGGAACCGGATAGAGAAAATAGACGGCATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAAATTGACCCTGAAAGAGATCAAAGAACAGTGTTTGCTTATCAGATTTCTCTTAAAGCGGACGAAAGAGACGTTTATGAGTTCTTCTCGAGGGCTGGCAAGGTGCGAGATGTTCGATTGATTATGGACCGCAATTCAAGACGTTCTAAAGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTTCCCATGGCAATAGCACTTTCAGGGCAACCTCTTCTTAGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCTAGTGGACCTACTGGAAATTTAGGGCCTTATTCTGGGGGTGCGAGAAGGCTCTATATAGGCAATCTACATTCTAGTATTACTGAATCTGATCTTCGTAGGGTATTTGAAGCATTTGGTCAAGTTGAGCTAGTCCAGCTGCCTCTTGATGACATTGGGCATTGCAAAGGCTTTGGCTTTGTGCAGTTTACCCGCCTTGAAGATGCAAAAAATGCTCAGAGCTTGAATAGTCAATTGGAAATAGGTGGCAGGACAATCAAGGTATCAGCTGTTACTGATCAACCTGGAATGCAAGAATTCGGCGGAAATACTGGTGATATTGACGATGATGAAGGTGGTGGTTTGTCCTTGAATGCCTCTTCCCGAGCATTACTCATGCAGAAGTTGGATCGAAGTGGCACTGCATCAAGTATGGTTGGTTTTCTCGGCAATTCTGCTGTCAACAATACAGGCGTTAATCTACAAGCAACGGGAAATATACCAGCAGGAGCTCTTTTAGGAGCTGCACCAGTGGGTTCACTGGTTTCCTCCCTTTCTTCTGTTCCTGCATTAGCTGGACTGCCAGGTGGAGGTTTCCAAATTCCAATACTGACAAGTCCTTCTATTGAAACAATTGGCGTTCCAAGTGAATGTTTATTGTTAAGGAATATGTTTGATCCCGAAAATGAGAAGGAACCAGATTTTGATTTTGATGTTAAAGAAGACGTTGAAGCAGAATGCTCCAAGTTTGGGAACTTACAACATATATATGTTGATAAGAAGAGTGCTGGATTCGTCTACTTACGATTTGAAGATACCCAATCTGCAATAAGTGCACAGCGGGCCTTACATGGAAGATGGTTTGCGGGGAAGATGATCACCGCAAGCTTTATGGTGCCCCAGTCATATGAGGATAAATTCCCAGACAGCAAATAA 1842 0.411 MDFDEYEYLEKTVENSEFKNQKETTNGGDRTVKSEDRGRSRSSKHKDSEKDDGDVDHCLKQSKSGDVSRGYDRQKERGSSRRRSRSRDGDKEKDQHRSSRGNKDRKSDRDRDSEDKYRRERDRDQDLERDRRNRGSESEKEKERSRRSESRLRRHQSDLDNKDREISRDREYRERERSRDKDFRDRGMARDLKEPDRENRRHKEKKEEAAEPEIDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLSQPVMVKPSEAEKNLVQSTASVASGPTGNLGPYSGGARRLYIGNLHSSITESDLRRVFEAFGQVELVQLPLDDIGHCKGFGFVQFTRLEDAKNAQSLNSQLEIGGRTIKVSAVTDQPGMQEFGGNTGDIDDDEGGGLSLNASSRALLMQKLDRSGTASSMVGFLGNSAVNNTGVNLQATGNIPAGALLGAAPVGSLVSSLSSVPALAGLPGGGFQIPILTSPSIETIGVPSECLLLRNMFDPENEKEPDFDFDVKEDVEAECSKFGNLQHIYVDKKSAGFVYLRFEDTQSAISAQRALHGRWFAGKMITASFMVPQSYEDKFPDSK 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01648 613 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 609 - -
Car04g01648 613 CDD RRM1_RBM39_like 222 294 - -
Car04g01648 613 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 402 IPR000504 GO:0003723
Car04g01648 613 SMART rrm2_1 520 598 IPR003954 GO:0003676
Car04g01648 613 SMART rrm2_1 326 398 IPR003954 GO:0003676
Car04g01648 613 SMART rrm1_1 520 598 IPR000504 GO:0003723
Car04g01648 613 SMART rrm1_1 222 294 IPR000504 GO:0003723
Car04g01648 613 SMART rrm1_1 326 398 IPR000504 GO:0003723
Car04g01648 613 CDD RRM3_RBM39_like 518 600 - -
Car04g01648 613 PANTHER CC1-LIKE SPLICING FACTOR 1 609 - -
Car04g01648 613 TIGRFAM SF-CC1: splicing factor, CC1-like family 102 611 IPR006509 GO:0003723|GO:0005634|GO:0006397
Car04g01648 613 MobiDBLite consensus disorder prediction 1 216 - -
Car04g01648 613 SUPERFAMILY RNA-binding domain, RBD 325 606 IPR035979 GO:0003676
Car04g01648 613 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 417 537 IPR029123 -
Car04g01648 613 Gene3D - 514 613 IPR012677 -
Car04g01648 613 SUPERFAMILY RNA-binding domain, RBD 217 322 IPR035979 GO:0003676
Car04g01648 613 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Car04g01648 613 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 288 IPR000504 GO:0003723
Car04g01648 613 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 396 IPR000504 GO:0003723
Car04g01648 613 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 542 595 IPR000504 GO:0003723
Car04g01648 613 Gene3D - 214 307 IPR012677 -
Car04g01648 613 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 519 602 IPR000504 GO:0003723
Car04g01648 613 Gene3D - 319 428 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01648 Car-Chr4 17008198 17018860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01648 222 388 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 6.50e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01648 K13091 - gmx:100789839 791.956