Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01639 ATGAACAATAATAATTTCATGATGCAAAACATAACTGAGAGATTAAGACCCCTTGTTGGTTTGAATGGATGGGACTATTGTGTCTCCTGGAAATTAAGTGAAGATCAAAGGTATCTTGAGTGGTTGGGATGTTGTTGTGGTGGGAGTGAAAGCAACCAAAATGGCGGGGAACAACATATTTTCCTTGTCtcttcttcttcttcttcttcATGCAGGGATACAATGTTTTCACATTCAAGAACAAAGGCTTGTGATCTTCTTTCACAACTTAACACTTCCATATCAACAGATTCTGGGATTCATGCACAAACTCTATTAGCAAACCAACCCAATTGGTTGAACTATCCCAATACCTTGGATCCAAACACTTTACAAGAAACAATTAATGGGACCCATGTTTTGATTCCAGTGCCTGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTTGGTGAAGATCAACAGGTACTAGATTTTATCACATCACAGTGCATTGTGTTGGTTGATCAAGAAGGGATGAATAACTCAATTGGCTTCAATTCAATGAGCAACATGCAATCAAATCAAGTTGTATGTGATGAAAATGATGGAAACAATAAAACAAACAATCATTTTCATCCATCAGATAGTTTGAGTCTTCCACCTCATGATCACATATCTGTAATGAACTTCATGCAACAATTCAATTACAATTACAATTACAATCAACAAAACAACAGAATGAGAAATGATGAAACCTTTTCAGAAGAATACCAAGGTTCATTCTTTCATGATCATGAAAACAGCAACAACAATCTTGTAAAACCCAATACAGAAGAGGAACATGAGCATAAAAGCTTGATGACAGAAGAGCAGTATGTGTTTGTGAATCCATTAGACTCAAAAAAGAATCAAGAAGAAGAAGAGAAGGATTTGATGAAACATGTTGTTGGTAGATCAGATTCCATGTCAGATTGCAGTGATCAAAATGAAGAAGAGGAGGATGGAAAATATAGGAGAAGAAATGGGAAAGGAAACCAATCAAAGAACCTTGTAGCAGAGAGAAAGAGAAGGAAGAAACTGAATGATAGGTTATATAACCTTCGTTCATTGGTTCCAAGAATATCAAAGCTAGATAGAGCTTCGATTCTTGGTGATGCTATTGAGTATGTGAAGGATTTGCAGAAACAAGTGAAAGAGCTACAAGATGATCTTGATGAAAATTCAGACACAGCAACTGAAAGTAACTGTGTGATTAATAATCAATATGTGAATGGTTATCATGTTGTTGGGAATGGTAATGAGAAGCAGACACAGCAGATGGAGGCACAAGTGGAAGTGGCTCAGATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCATAGGGCTGGTGGGTTTGTGAAATTGATGGAAGCATTGAATAGTTTAGGCATGGATGTATTACATGCCACAGTGACCAGTCACAAGGGTCTTGTGTCAAATGTCTTTAAAGTAGAGAAAAAGGAGAGTGAGATAGTTGAGGCTGAAGATGTAAGAGAATCACTTATAGAGCTGCTGACGAGGAATAGATGGAATAGTGATGAAAAGAAGATGGCACATAATGATCAACTACTCCACATTGCTGCTTCATATTGA 1620 0.3673 MNNNNFMMQNITERLRPLVGLNGWDYCVSWKLSEDQRYLEWLGCCCGGSESNQNGGEQHIFLVSSSSSSSCRDTMFSHSRTKACDLLSQLNTSISTDSGIHAQTLLANQPNWLNYPNTLDPNTLQETINGTHVLIPVPGGLVELFVTKQVGEDQQVLDFITSQCIVLVDQEGMNNSIGFNSMSNMQSNQVVCDENDGNNKTNNHFHPSDSLSLPPHDHISVMNFMQQFNYNYNYNQQNNRMRNDETFSEEYQGSFFHDHENSNNNLVKPNTEEEHEHKSLMTEEQYVFVNPLDSKKNQEEEEKDLMKHVVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDDLDENSDTATESNCVINNQYVNGYHVVGNGNEKQTQQMEAQVEVAQIDGNEYFVKVFCEHRAGGFVKLMEALNSLGMDVLHATVTSHKGLVSNVFKVEKKESEIVEAEDVRESLIELLTRNRWNSDEKKMAHNDQLLHIAASY 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01639 539 CDD ACT_UUR-ACR-like 450 514 - -
Car04g01639 539 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 13 162 IPR025610 -
Car04g01639 539 SMART finulus 344 393 IPR011598 GO:0046983
Car04g01639 539 CDD bHLH_AtAMS_like 341 410 - -
Car04g01639 539 Gene3D - 326 403 IPR036638 GO:0046983
Car04g01639 539 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 101 518 - -
Car04g01639 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 402 IPR036638 GO:0046983
Car04g01639 539 Coils Coil 493 513 - -
Car04g01639 539 Coils Coil 377 404 - -
Car04g01639 539 MobiDBLite consensus disorder prediction 256 349 - -
Car04g01639 539 Pfam Helix-loop-helix DNA-binding domain 345 388 IPR011598 GO:0046983
Car04g01639 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Car04g01639 539 ProSiteProfiles ACT domain profile. 449 520 IPR002912 -
Car04g01639 539 MobiDBLite consensus disorder prediction 294 311 - -
Car04g01639 539 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 101 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01639 Car-Chr4 16935047 16938874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01639 8 523 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.306 5.30e-137 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g01639 bHLH-MYC_N 2e-19 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01639 - - aprc:113871920 676.781