Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01627 ATGGCTGCATCATCTTCTTCAGCATCACTGTTTGGATTTAGAGGAGAAGAAGAATCAAATCAAATGAAGCAACAACATTCACTTCCACCTTCATCATCAATTGCTACTCCAGCTGCACCATCTCAGAAGAAGAAGAGAAACCAACCTGGAACACCAAGCAAGTATCTCAACTATTTTTATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACACTAATGGCAACAAACAGGTTTATATGTGAAGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACTTGCCTTGGAAGCTTAAGCAGAAGAGTACAAAAGAGCCTAAGAGAAAGGTTTATCTTTGTCCTGAGCCCACATGTGTTCATCATGATCCTTCAAGGGCTCTTGGTGACCTCACTGGGATTAAGAAACACTACTCTCGCAAACATGGTGAGAAGAAATGGAAATGTGACAAATGCTCCAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATATAGATGTGATTGTGGCACTCTCTTCTCCAGGAGAGACAGTTTCATAACACACAGAGCTTTCTGTGATGCATTAGCTCAAGAGGGACCAAGACAGGCACCAATTACCCTAAGTGGTAGCAGCATTGGCAGCCATCTTTATGGAGCTGGAGGAAACAGCGGCACCAACAACTCCATCATGGGATTAAACTTATCCCATCATGTACCTCAACAAATCTCCAACATCCAACAAGACCACACCAATTCACCGACAGAACTCCTTCGACTCGGCGGCAATGCTACCGCGAATCGAACCGGACAATTCGATCACCACATTCTCCCAACATCTTTCAGACCTAATTCCTTCTTTCATCCTGAACAAAACCAAAACTATGTCCCTGACCCAACCAACAACCTCTTCAACATTCCTTTCCTTAACAAcaacaacaacaacagtactaataataataacaatactaatagtgggagcaactcgttttCTGAACAGTTGAATATGAATCATGAAGGAACAAATTTTTTCAGTGGATCAGGAACAAGTAGTGCACCTTCATTATTCAGCACTTGTCTTCAACAAGGAGGAGGAAGCAGTGGAATATCTCATATGTCTGCAACTGCATTGCTTCAAAAAGCTGCTCAGATGGGTGCAACTTCGAGCAACGGAAATGGAACAGCAACTTCGCTTTTGAAAAGCTTTGGAAACACTACTAGTAATAATTCATCTTCAggtggtggtggtggaagtggaaactatggaggttttggtgttggtggtggAAATGAACAACAGAATAGTAATTTGCAGGATTTGATGAACTGTTTtgctgttggtggtggtggtgggggtggGAATAGTAATTCAATATTTGATGGAATTGGAGGTAGTTGTAGTGAAAGGCAGCTTACTCGTGATTTTTTGGGAGTTGGTGGTCAGATAGTGAGAAGCATGAGTGGAAGAGatcatcatcatcatcatcatcatcaACATGCACCTGCTGCTTTTAGTAACATGCCTTCTATGGAAAACAATGCTGCTGCACCATCGTCTTTtggaggaggaggaggaagaggtggtgctggtgcttctgctggtgctgctggtggaggaggGAATTTTCACTGA 1662 0.3634 MAASSSSASLFGFRGEEESNQMKQQHSLPPSSSIATPAAPSQKKKRNQPGTPSKYLNYFYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQAPITLSGSSIGSHLYGAGGNSGTNNSIMGLNLSHHVPQQISNIQQDHTNSPTELLRLGGNATANRTGQFDHHILPTSFRPNSFFHPEQNQNYVPDPTNNLFNIPFLNNNNNNSTNNNNNTNSGSNSFSEQLNMNHEGTNFFSGSGTSSAPSLFSTCLQQGGGSSGISHMSATALLQKAAQMGATSSNGNGTATSLLKSFGNTTSNNSSSGGGGGSGNYGGFGVGGGNEQQNSNLQDLMNCFAVGGGGGGGNSNSIFDGIGGSCSERQLTRDFLGVGGQIVRSMSGRDHHHHHHHQHAPAAFSNMPSMENNAAAPSSFGGGGGRGGAGASAGAAGGGGNFH 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01627 553 Gene3D Classic Zinc Finger 62 127 - -
Car04g01627 553 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Car04g01627 553 SMART c2h2final6 155 175 IPR013087 -
Car04g01627 553 SMART c2h2final6 120 150 IPR013087 -
Car04g01627 553 SMART c2h2final6 79 101 IPR013087 -
Car04g01627 553 MobiDBLite consensus disorder prediction 407 426 - -
Car04g01627 553 Pfam Zinc-finger double-stranded RNA-binding 79 101 IPR022755 -
Car04g01627 553 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Car04g01627 553 MobiDBLite consensus disorder prediction 22 53 - -
Car04g01627 553 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 503 - -
Car04g01627 553 MobiDBLite consensus disorder prediction 1 53 - -
Car04g01627 553 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 503 - -
Car04g01627 553 MobiDBLite consensus disorder prediction 320 348 - -
Car04g01627 553 Gene3D Classic Zinc Finger 133 209 - -
Car04g01627 553 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Car04g01627 553 MobiDBLite consensus disorder prediction 498 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01627 Car-Chr4 16787366 16792637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01627 42 498 IDZ Gene Family AT2G02070 50.094 3.69e-131 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g01627 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01627 K25870 - gmx:100799389 533.102