Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01613 ATGGTTCTTCAAAACGACATTGATCTGTTGAATCCACCAGCCGAACTCGAGAAGAGGAAGCACAAGCTCAAGCGCCTCGTTCAATCCCCCAATTCATTCTTCATGGATGTCAAATGTCAAGGTTGCTTCAATATAACTACTGTATTTAGTCACTCCCAAACTGTCGTGGTTTGCGGTAATTGCCAGACAGTTTTGTGCCAGCCAACTGGTGGCAAAGCAAGGCTAACTGAGGGATGCTCTTTCAGGAAGAAGGGAGATTAG 261 0.4559 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01613 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Car04g01613 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Car04g01613 86 Gene3D - 5 85 IPR023407 -
Car04g01613 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Car04g01613 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Car04g01613 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
Car04g01613 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01613 Car-Chr4 16655403 16656856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01613 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 96.512 3.23e-60 176