Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01600 ATGCTTCCTATGAGCTGCATTCTTTTAATGTGTCTCTTCATTTCTTTTTCATCCCAAATCAAAGCTCATAAAACTACTTTCTCCAATCTCACCTTACCCCACCAACATCCTTACCCTGAATCTGTCGTTCAACAACTTCAACAGAAAATCAATGCGTCACTTTCGAGAAGAGAACTACTCTCAAAGAACCAAGGTTCTTGTTTAACGGGAAATCCAGTGGACGATTGTTGGCGGTGCGACACAAACTGGGCGGCAAACCGTCAGAAACTAGCAGATTGCGGAATCGGATTCGGACGCGCCGCCATGGGAGGTAAAAACGGTCAGATCTACATCGTAACAGATTCCTCCGACAACGACCCAGCGAATCCCGTTCCGGGAACACTCCGTCACGCCGTAATCCAAGACGAACCACTGTGGATCGTATTCGCCGCCGACATGACAATAAACCTCCGTCACGAACTAATTTTCAACAGTTACAAAACCGTGGACGGACGTGGAGCAAACGTTCAAATCACCGGGCACGGCTGCATAACACTTCAATACATCTCAAATATCATAATTCACAATATCCACGTTCATCATTGTAAACCCTCGGGAAATACTAACATACGTGCGAGTCCAACGCATGTAGGGTGGAGAGGCGTATCGGACGGTGATGGAATATCAATATTTGGTTCGCGTAACATATGGATCGACCATTGCTCTTTATCTTATTGTACAGACGGTTTGATTGATGCTATAATGGGGTCCACAGCTATAACAATTTCTAACAACCATTTTGGTCATCATGATGAAGTTATGTTACTTGGTCATAATGATAAGTATTTGCCTGATAGAGGAATGCAAGTTACTATTGCGTTTAATCACTTTGGTGAAGGACTTGTTCAGCGTATGCCGCGTTGTAGATTGGGTTATATTCATGTTGTTAATAATGATTTTACGCAGTGGGAAATGTATGCTATCGGTGGTAGTGCTAACCCTACTATTAACAGTCAGGGTAACCGTTACACCGCTCCCTCCGACCCAAACGCCAAAGAGGTGACGAAGCGCGTGGAGACAGACGATAAAGAATGGAGTGGTTGGAATTGGAGGACGGATGGGGATATAATGGTAAATGGAGCATTCTTTGTGCCTTCAGGAGCGGGGCTAAGTGCGCAGTACGCACAGGCTTCTAGTGTGCAACCCAAATCCGTCGTGCAAATCGACCAGCTCACTATGTACTCCGGTGTCTTCGGCGATCCCAGGGATAATGGTGATATATATCCCGGTTTCAACGGTGGTGGGACCACAACTGGAGGCACCAACATGAACAAAGGCTACAATGGGGGGTCCAGTAGTGACGATGGAGACTTGTTTGGGATGATATTCAAAGGTAGCAGCAGCCAAGCACCACCCTACTCAAAATCAAATGTATTTGTTTCAACTTTTTTGTCTCTTTTAATTATTTTCATTTTGGACACTATCACCAACTATGATATTCTATTATCATTACTATGA 1497 0.4456 MLPMSCILLMCLFISFSSQIKAHKTTFSNLTLPHQHPYPESVVQQLQQKINASLSRRELLSKNQGSCLTGNPVDDCWRCDTNWAANRQKLADCGIGFGRAAMGGKNGQIYIVTDSSDNDPANPVPGTLRHAVIQDEPLWIVFAADMTINLRHELIFNSYKTVDGRGANVQITGHGCITLQYISNIIIHNIHVHHCKPSGNTNIRASPTHVGWRGVSDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFGHHDEVMLLGHNDKYLPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVETDDKEWSGWNWRTDGDIMVNGAFFVPSGAGLSAQYAQASSVQPKSVVQIDQLTMYSGVFGDPRDNGDIYPGFNGGGTTTGGTNMNKGYNGGSSSDDGDLFGMIFKGSSSQAPPYSKSNVFVSTFLSLLIIFILDTITNYDILLSLL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01600 498 PANTHER PECTATE LYASE 5 432 - -
Car04g01600 498 SUPERFAMILY Pectin lyase-like 61 387 IPR011050 -
Car04g01600 498 SMART amb_all 145 342 IPR002022 -
Car04g01600 498 Coils Coil 43 63 - -
Car04g01600 498 PANTHER PECTATE LYASE 18-RELATED 5 432 IPR045032 GO:0030570
Car04g01600 498 Pfam Pectate lyase 152 334 IPR002022 -
Car04g01600 498 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Car04g01600 498 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Car04g01600 498 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Car04g01600 498 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Car04g01600 498 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Car04g01600 498 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Car04g01600 498 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Car04g01600 498 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Car04g01600 498 Gene3D - 70 412 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01600 Car-Chr4 16494128 16501112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01600 29 417 Polysaccharide Lyase AT3G54920 67.581 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01600 K01728 - gmx:100808438 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01600 04 16494128 16501112 Car04g01600 04 16494128 16501112 ECH