Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01594 ATGTCTGGGAAGGAAGATAATCGAATATTTGTTGGAGGATTGTCTTGGGACGTTACGGAACGTCAACTTGAGCATGCCTTTGATCGTTACGGCAAAATTCTTGAATGCCAGATCATGATGGAGAGGGATACAGGACGTCCACGTGGATTTGGGTTTATTACATTTGCAGACCGTCGCGGAATGGAGGATGCAATCAAGGAAATGGATGGACGAGAAATTGGTGATCGCATCATCTCAGTCAACAAGGCACAGCCCCGGATGGGAGGTGATGATGCAGACCAAGGTTACAGAGGTGGCTACTCATCAGGTGGTAGAGGAAGCTATGGGGCTGGAGATAGGGTAGGACAGGATGACTGTTTCAAATGTGGGCGTCCAGGGCATTGGGCCCGAGATTGTCCTTTGGCAggaggtggaggtggtcgtggtcggggtggtggtTCATTTTCTTCACGCCCTAGGTTTGGAGGTGCTGGTGGACACGGGGATCGCCTTGGCGAGCGATACATTGATGATCGTAATGATGGAGGACGTTATGCGGATAGGGACCGTTTAGACAGCCGAGACTACAAATATAGTGGCCGCGATCGCTATGCTGGTGACAGGTATACAACTAGTGGCGATCGATTTGCAAGTGATCGATATGGCAGTGGCTCAGACTACCCACAAAATGGTTATGGGAAGGAAAGAGGCTACGACCGTTACAGCGGTGCTCGTGGAGGAGCTGATAGATATGGAAGTGGAATGCCAGCCCGTGATGAAGGAAGGAATTATAGGGGTAGGGCTGGTCCTTATGACCGCCCAAGCAGGACTGCTCGTCCATCATCATTTGACCGTTACTGA 840 0.4833 MSGKEDNRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMDGREIGDRIISVNKAQPRMGGDDADQGYRGGYSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGGGGRGRGGGSFSSRPRFGGAGGHGDRLGERYIDDRNDGGRYADRDRLDSRDYKYSGRDRYAGDRYTTSGDRFASDRYGSGSDYPQNGYGKERGYDRYSGARGGADRYGSGMPARDEGRNYRGRAGPYDRPSRTARPSSFDRY 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01594 279 SUPERFAMILY Retrovirus zinc finger-like domains 103 138 IPR036875 GO:0003676|GO:0008270
Car04g01594 279 MobiDBLite consensus disorder prediction 84 110 - -
Car04g01594 279 Gene3D - 115 143 - -
Car04g01594 279 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Car04g01594 279 Gene3D - 2 114 IPR012677 -
Car04g01594 279 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 238 - -
Car04g01594 279 SMART rrm1_1 8 81 IPR000504 GO:0003723
Car04g01594 279 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Car04g01594 279 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Car04g01594 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Car04g01594 279 PANTHER TRANSFORMER-2-RELATED 1 238 - -
Car04g01594 279 MobiDBLite consensus disorder prediction 136 279 - -
Car04g01594 279 MobiDBLite consensus disorder prediction 163 202 - -
Car04g01594 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Car04g01594 279 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01594 Car-Chr4 16435881 16440689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01594 9 88 C2H2 Transcription Factor Family AT2G19380 42.500 3.88e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01594 - - gmx:100776333 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01594 04 16435881 16440689 Car04g01594 04 16435881 16440689 ECH