Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01563 ATGTCTTTTTTCTTCCTTTATAACCATTTCAGGAGACCAGAAGGAAATCCATTAGATCTTAACAATTTACCTGATGAGTACACAAGAGATGGTAAACAAGTCCTTGAAGACATCTCTCCACCCGGTTGCAGGAAAAAGAAAAACGGCGGGAAGGATGGAAAAGATGAGTGTGGGAAGGTCTATGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAATCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACAGAGACGCTAAACCATGCTCGTCAGCTAGTCTTCCGTAACGATCATAACATCACTCCACAACCTCCCTCTCACCTAGGATGTTGTCCACCACAGATAGCAACAGCAGGCTATATTCCAGCAGCAAATAACATGGGAGATCCAACAATGCCACTAAGATTCCCAAGATACTTCTCCGCTTCATCCTCCTCAACTCACATTccaccacctccaccgccgccacaacaaccGTATCTCTACTCTTCACCTTCACGCCCAGTGTCATTCGCACCACATTTGATTCCTCAGCATCCAATGAATGACTACCACGTTGGTCACGTGATGAATACCAGCCACCACCAACAATATGGAGGACACCACTATGTTGCGGGTGCAGGTGGAGGTGAGTCTAGTAATTACACGTGCATAGGTGCACCGGTGGGACAAGGTTTTCCGGGAAATGGAAGAGGGTtggtggagggtggtggtggtggtggtAAGGAAGGGAatcatcatcatcatcataatcatcatcCGGAAGAAGGGTTGAATTGGGAAAGGAGCTATGCAGGAGGAACACAGCATCGTTTGGATACAACTTCATCGATCAATCGGTTTCAAGATGGTTTCTAA 876 0.4212 MSFFFLYNHFRRPEGNPLDLNNLPDEYTRDGKQVLEDISPPGCRKKKNGGKDGKDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNITPQPPSHLGCCPPQIATAGYIPAANNMGDPTMPLRFPRYFSASSSSTHIPPPPPPPQQPYLYSSPSRPVSFAPHLIPQHPMNDYHVGHVMNTSHHQQYGGHHYVAGAGGGESSNYTCIGAPVGQGFPGNGRGLVEGGGGGGKEGNHHHHHNHHPEEGLNWERSYAGGTQHRLDTTSSINRFQDGF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01563 291 PANTHER ZINC FINGER PROTEIN JAGGED 12 252 IPR031113 GO:0007275
Car04g01563 291 MobiDBLite consensus disorder prediction 35 54 - -
Car04g01563 291 PANTHER ZINC FINGER PROTEIN JAGGED 12 252 IPR045320 GO:0003700
Car04g01563 291 MobiDBLite consensus disorder prediction 241 265 - -
Car04g01563 291 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Car04g01563 291 Gene3D Classic Zinc Finger 44 110 - -
Car04g01563 291 MobiDBLite consensus disorder prediction 247 265 - -
Car04g01563 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Car04g01563 291 SUPERFAMILY beta-beta-alpha zinc fingers 59 89 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01563 Car-Chr4 16033064 16036997 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01563 10 231 C2H2 Transcription Factor Family AT1G13400 44.000 9.04e-33 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01563 - - mtr:MTR_1g110710 392.504