Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01549 ATGGACTACAACACTAAAACAACAAACCCCACTACCCAAACACGCCTTAAACTATTTGGCTTCAACGTCCACGAAGACGAAGCCATGCACGATCAAGACTCAACAACAACAAAAGcaacttcttcttcaacttcaacttccccttcaaGATCACCGGACTCCTCCGCTGTCGGTGACACTTTCCCACCTTCCTCCGGTGAACGAAAATACGAGTGCCAATACTGTTGCAGAGAGTTCGCAAATTCACAAGCACTTGGTGGTCACCAAAACGCTCACAAAAAAGAACGTCAACAACTCAAACGCGCTCAGTTACAAGCAAACCGAAACGCCGCCGTTTCCTTCGTACGAAACCCTATCATCTCCGCCTTCGCTCCTCCGCCGCACCTGTTAGCACCGCCTGGGTCAATGATGGTTCCAGCCTCACCATCCTCTTGGGTATACGTTCCGCCACGTGCTGCTCCTCCTCCCTTCCACGTGTCAGTATCACACGGTTGTGTTTTTCCGTCGGCGAATGGAAACGCCGTTAGTAATATGAACGTCACGGGTGTGAAATCAGTGATGGGTGCGGGAATGTTTCCGTGTGTTGGCGTTGTAGGGGATTCGTCATCCGCATTGTCAACGATGCAGGTACAAAGCCGGGCCCACCATGTTAGGATTGATGGGCCATCTTTGAGTAGGTTCTCTAAAAGTGATAGTGGGCCCAATTTTGATGATGCATTGGGCTTGGACTTGCATCTTAGTCTTGCCCCAGCTGCCACTCCAACACACGGCTCGGCTCAGCTCCGTTTTTCTGGATACTCCCCTTAG 807 0.4907 MDYNTKTTNPTTQTRLKLFGFNVHEDEAMHDQDSTTTKATSSSTSTSPSRSPDSSAVGDTFPPSSGERKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQANRNAAVSFVRNPIISAFAPPPHLLAPPGSMMVPASPSSWVYVPPRAAPPPFHVSVSHGCVFPSANGNAVSNMNVTGVKSVMGAGMFPCVGVVGDSSSALSTMQVQSRAHHVRIDGPSLSRFSKSDSGPNFDDALGLDLHLSLAPAATPTHGSAQLRFSGYSP 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01549 268 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Car04g01549 268 PANTHER ZINC FINGER PROTEIN 5 6 252 IPR044299 GO:0010090
Car04g01549 268 SUPERFAMILY beta-beta-alpha zinc fingers 66 97 IPR036236 -
Car04g01549 268 MobiDBLite consensus disorder prediction 34 61 - -
Car04g01549 268 Gene3D Classic Zinc Finger 56 117 - -
Car04g01549 268 MobiDBLite consensus disorder prediction 26 65 - -
Car04g01549 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Car04g01549 268 PANTHER ZINC FINGER PROTEIN GIS3 6 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01549 Car-Chr4 15817340 15818306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01549 1 252 C2H2 Transcription Factor Family AT1G68360 44.727 1.15e-55 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01549 - - cam:101491977 512.301