Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01544 atggtcacaaaacacctattcttcttttcatgcttcattatacaacttatactaacttcaAGTACTTGTCCATCTTCAATTTACTGCGGATTCCTCGGAGAAATCAACTTTCCATTTACAACCACACAACACCCAAATTGTGGCATGTTAATAATCCATGGTTGTGATGACTCCGAACCACTTTCCAAAAAAACCATACAAAACAACAAAATTTGGTTCGATATTCTCGAAATTAAACCCTACACAATCACAATTCGTGACGATAAACTCCACGACCTGTTGCTACAAAGAAGTTGCGATATTCTAACCTACAATTCTATGTTCACTGTCAACACTCCTTTGGTTTCTTCTTATTTGCAGAATTATGTAACCGTTTTCGGTTGCAACGATAGCAATACGCACGATCTTCAACAGATTTATTCTGTTGCTAATTCTACTACGATTTGTAGGAACGATAGTTTTTACGGTATTTCTGATTCGGATATTGTAAAGAGTGATAATAAAGCTGTTGTGGTTGTAACTGATACTGGTGGTTCTAAATTGAATAGTCTTAAAGGATGCTCGAATGTTGAGCTTCCGACGAGGTCTGAGGTTCAACATATTGATCCTGATGATCTTTTTGGATTCTTGAGTGGTGATATTGCTATTAAAATACAAGTTTCTCAGAATTGTTCTGCTTGTCATGATCTTTATGGAGGTCAATGTAGACTTGATAACGCTGCCAAGTTTTACTGTCAACAAGGAAGATCTAAAAAGACCCGTCTTATAGTGGCAGCAGTTGCATCTGCCGCTGGAGTACTGTTAGTTCTGGTTTTTCTAGCTTGGTTCATGAGAAGACAGTTTTTGAACAATAAAAACCCTTCACATCAAATAATTGAGTTGTTTCTCAAAAACCATGGTCACCTTTCTGCTAAAAGATACACTTATGCAGAGATAAAGAAGGCAACAAATTCAttcaaaaacaaattgggtcaaggaggatatggcagtgtatacaaaggaaaattacaagatggaagtctcgtggcagtgaaagtcttaagcgaatcgaacgggaacggcgaggaatttatcaatgaagttgctagtattagtgtcacttctcatgttaacatcgttagtttattgggattttacttggaaggttctaaaagagctttgatatatgactacatgcctaatggatcacttgagaagttcatatatgaaaataaagatccattaaaactcaatcttcaattgagttgtaaaactatctacaatattgcaatcggcgttgctcgaggattagagtatttgcacaaaggttgcaataccaaaatcttgcattttgatataaaacctcacaatatattactagacggtgatttttgtcccaagatttctgattttggactcgcgaaagtatgtcctagaaaagaaagtatcatttccttattaggtgcaagaggtactgcaggatacattgctccagaagtgttctctagaaattttggtggtgtctctcacaagtctgatgtttatagctacggaatgatggttttagaaatggttggggggAAACAAAATAACAATATCGTTGAAGTTGAACATTCGAGTGAAATTTATTTTCCGCATTGGGTTTACAAACGGCTTGAACTGAATCAAGATCCTAGGTTGAGAAGCATAAAAAATGAATTTGATAAAAGAATTGTACAAAAGATGATTGTAGTAAGCTTATGGTGCATACAGACTGATCCAGCACATAGGCCTGCAATGAGTAAAGTGGTAGATATGATGGAAGGTAACTTGGAATCCTTGCAAATACCACCAAAACCTTGTCTCTCTTCACCTCCCAGGTCTCCTTCAAGATCATCAGATTTCAACACTCATACATCTCAAGATTTGTATCATTCAGGCACATCTCCCACCAGCGATTATCAACCTCTAATAATTTCCCCTTGGTAG 1947 0.2455 MVTKHLFFFSCFIIQLILTSSTCPSSIYCGFLGEINFPFTTTQHPNCGMLIIHGCDDSEPLSKKTIQNNKIWFDILEIKPYTITIRDDKLHDLLLQRSCDILTYNSMFTVNTPLVSSYLQNYVTVFGCNDSNTHDLQQIYSVANSTTICRNDSFYGISDSDIVKSDNKAVVVVTDTGGSKLNSLKGCSNVELPTRSEVQHIDPDDLFGFLSGDIAIKIQVSQNCSACHDLYGGQCRLDNAAKFYCQQGRSKKTRLIVAAVASAAGVLLVLVFLAWFMRRQFLNNKNPSHQIIELFLKNHGHLSAKRYTYAEIKKATNSFKNKLGQGGYGSVYKGKLQDGSLVAVKVLSESNGNGEEFINEVASISVTSHVNIVSLLGFYLEGSKRALIYDYMPNGSLEKFIYENKDPLKLNLQLSCKTIYNIAIGVARGLEYLHKGCNTKILHFDIKPHNILLDGDFCPKISDFGLAKVCPRKESIISLLGARGTAGYIAPEVFSRNFGGVSHKSDVYSYGMMVLEMVGGKQNNNIVEVEHSSEIYFPHWVYKRLELNQDPRLRSIKNEFDKRIVQKMIVVSLWCIQTDPAHRPAMSKVVDMMEGNLESLQIPPKPCLSSPPRSPSRSSDFNTHTSQDLYHSGTSPTSDYQPLIISPW 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01544 648 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 29 632 - -
Car04g01544 648 SMART serkin_6 317 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01544 648 MobiDBLite consensus disorder prediction 601 638 - -
Car04g01544 648 MobiDBLite consensus disorder prediction 612 638 - -
Car04g01544 648 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524
Car04g01544 648 SUPERFAMILY Protein kinase-like (PK-like) 300 593 IPR011009 -
Car04g01544 648 Gene3D Phosphorylase Kinase; domain 1 296 391 - -
Car04g01544 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Car04g01544 648 PANTHER RUST RESISTANCE KINASE LR10-RELATED 29 632 IPR045874 GO:0004672
Car04g01544 648 Gene3D Transferase(Phosphotransferase) domain 1 392 602 - -
Car04g01544 648 Pfam Protein kinase domain 320 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01544 648 ProSiteProfiles Protein kinase domain profile. 317 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01544 Car-Chr4 15774874 15778125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01544 261 608 Receptor kinase-like Gene Family AT4G18250 55.618 7.44e-127 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Car04g01544 Pkinase 5.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01544 - - gmx:100785979 804.283