Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01543 ATGGCCTCAGTTTATGGATTTCTCTTCCTTTTGTTTTCACAAGTCATGTTGCTAGTTGTGTTGGTGAGTGGAGATGAGAATAAGTACGAAGAAGGAGAGTGTCCACCTTCATTTAGTTGTGGATATCTTGGCAATATCAGCTTCCCTTTCACTACAACTGAACACAAAGACTGTGGCTTATTGCCAATACAATATTGTCATGAATCTATGATGAAGCCCAAAGTGATCCAATATCAGTATAAAGGGATATTGTTTGAGTTTGAGGTTGAAGCTGTAATCCCTCCTTTGTTTCACGCTGGTGGTGGTAGTGTTTCTTCTACTTGTATTTTTAGAGACAAACAACTCTACAAATTACTTCAAGACAAAAATTGTGAAGCTTTCAGATATAATTTTACTTTTCCTCCAACCCCTGATCACTTTGTTTCTTTTAACCCCGATACTTATACGACCTTGTTCATGTGCAACCATACCCTTCATGTCAACCCTTCAAATTATATGCATAACTATACACACTGTTCTCATTACAATATCTACTACCAGCCTCACATCAGGGACGATAGTGCACCTCGCAGTGCTTTTACAGCTTGTACAAATGTCAAGCTTCCGATTAAAGACCTCGCTGACTCTAACAACCCTTTTAATTTTGTGACTGCTGATATCTTAACTGATATGAAGATAACAGATGAATGTGCACATTGTCACTACATGCAAAGAGGACGTTGTCAACTTGACATCAATGGAAGGTTTTATTGTGCCAATGTTACAGTTACAAAGAAAAAGGGGCTGAGTCAGAGTGTTAAACTGGGTATAGCTGTCATGGTGGCTATTGGAGTTTCCGTGATGATGTTGTTGGCTTACTGCATAAGGACAAAGATCTTCCCTCCCATATTTCTTTTGTTCAGGAAGGAGAACTCAACCCATCATATTATTGAGGAGTTTTTAAAAGAACAAGGACCTcttcatgcaactaggtacaattattcagatatcaagaaaataacaaactcttttagaaacaaattaggccaaggaggttatggaagtgtgtataaagggaagttatgcgataaccgtattgttgcagtgaaagttttaagtgaatcaaaaggtgatggtgaagatttcattaatgaagttgcaagtatcagtagaacttcacatgttaacattgttagacttcaagggttctgtttggatggttctaaaaaggcattaatatacgaattcatgtctaatggatctcttgagaagttcatatatgaagagaaatatccagtgaaggatgatcaccaattggattgcaaaatattgtatgatatttctgttggcgttgctcggggattagagtacttgcacagaggctgcaacactagaattttacattttgacataaaacctcataatatattactagacgaggatttcattcctaaaatttcagattttggactttctaaaatatgtcctaggaaagaaagcattgtttccctatttggtgcgaggggaacaattggatatattgctccagagttattctctcgaagttttggtggggtgtcacataaatcagatgtctacagttatggaatgatggttttagaaatggttggccgaagaaagaacatcaaggttgaagtcgattgttcaagtgagttatattttccacattggatttacaagcgactTGAATTGAATCAAGATCTTGGACTCAGGTGTATTAAAAATGAAATTGATGAAGAAATGGTTAGAAAAATGACAGTGGTGAGTTTATGGTGCATACAAACCGACCCTTCGAGTCGTCCAGCAATGCATAAAGTGGTTGAAATGTTGGAAGGGAGCCTTCAAGTGCTGGAGATACCGCCCAAACCCTTTCTGTGTTCTCCTTCAACATCTTCAATTCATTTATCATCAACTTGTTTATCATCTGAAATATTGTAA 1938 0.2405 MASVYGFLFLLFSQVMLLVVLVSGDENKYEEGECPPSFSCGYLGNISFPFTTTEHKDCGLLPIQYCHESMMKPKVIQYQYKGILFEFEVEAVIPPLFHAGGGSVSSTCIFRDKQLYKLLQDKNCEAFRYNFTFPPTPDHFVSFNPDTYTTLFMCNHTLHVNPSNYMHNYTHCSHYNIYYQPHIRDDSAPRSAFTACTNVKLPIKDLADSNNPFNFVTADILTDMKITDECAHCHYMQRGRCQLDINGRFYCANVTVTKKKGLSQSVKLGIAVMVAIGVSVMMLLAYCIRTKIFPPIFLLFRKENSTHHIIEEFLKEQGPLHATRYNYSDIKKITNSFRNKLGQGGYGSVYKGKLCDNRIVAVKVLSESKGDGEDFINEVASISRTSHVNIVRLQGFCLDGSKKALIYEFMSNGSLEKFIYEEKYPVKDDHQLDCKILYDISVGVARGLEYLHRGCNTRILHFDIKPHNILLDEDFIPKISDFGLSKICPRKESIVSLFGARGTIGYIAPELFSRSFGGVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLRCIKNEIDEEMVRKMTVVSLWCIQTDPSSRPAMHKVVEMLEGSLQVLEIPPKPFLCSPSTSSIHLSSTCLSSEIL 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01543 645 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Car04g01543 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 638 IPR045874 GO:0004672
Car04g01543 645 SMART serkin_6 335 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01543 645 Gene3D Transferase(Phosphotransferase) domain 1 410 623 - -
Car04g01543 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Car04g01543 645 ProSiteProfiles Protein kinase domain profile. 335 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01543 645 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 638 - -
Car04g01543 645 Gene3D Phosphorylase Kinase; domain 1 311 409 - -
Car04g01543 645 Pfam Protein kinase domain 339 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01543 645 SUPERFAMILY Protein kinase-like (PK-like) 319 611 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01543 Car-Chr4 15765607 15767874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01543 5 637 Receptor kinase-like Gene Family AT5G38260 37.842 7.26e-129 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Car04g01543 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01543 - - cam:101490487 1318.52