Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01492 ATGGGGGATCACTTTGATTTGCTGGTTGATCGATTGCTCACTGAATCAACGTTAGAAGCAGCGATTGAAAGCAGAAAGCGTGCAATGCAGGCTGCTTCCTCCGCCGTTAATAATGCACAAGTTGATTTCTCTTTGTTGAAGATGGGTGTGGATGGTATCAAATTTGCAGGGAAGCTTGTAGAATGCAGGATATGTCATGATGATGATGAAGATTCTAATATGGAGACACCTTGCTCTTGTTGTGGTAGTTTGAAGTACGCACATCGAAGGTGTATACAACGGTGGTGCAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCCATTCAAGCCTGGTTATACAGCTCCTCCTCCGCTATTTCAGTTTGGGCGTATTCCAATGAGTTTCAGGGGAAATTGGGAAATTTCGCGAAGAGACTTAAATAGCACTCATTTGGTTAGCATGGTTCCCACTGACCAGAACCTTGTCAATTCTAACTATGATCAATATTCAGCCTCTTCTTCTGGAAGCTTGATGTGCTGCCGTTCAGTTGCTGTCATTTTCATGGTTCTGTTGATTTTAAGACATACACTTCCCCTTGTAATTAGTGGAAATAAGGA 605 0.4331 MGDHFDLLVDRLLTESTLEAAIESRKRAMQAASSAVNNAQVDFSLLKMGVDGIKFAGKLVECRICHDDDEDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQPFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLVNSNYDQYSASSSGSLMCCRSVAVIFMVLLILRHTLPLVISGNK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01492 201 SMART ringv_2 61 108 IPR011016 GO:0008270
Car04g01492 201 CDD RING_CH-C4HC3_MARCH 62 108 - -
Car04g01492 201 Pfam Protein of unknown function (DUF3675) 113 200 IPR022143 -
Car04g01492 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 117 IPR013083 -
Car04g01492 201 SUPERFAMILY RING/U-box 61 112 - -
Car04g01492 201 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Car04g01492 201 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Car04g01492 201 PANTHER OS01G0121200 PROTEIN 1 200 - -
Car04g01492 201 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 200 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01492 Car-Chr4 15129844 15131769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01492 61 108 C3H Transcription Factor Family AT2G37950 49.020 5.25e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01492 - - vun:114190540 380.178