Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01474 ATGGATCCAGTGCCTGCTAATGTGTCTATTCCACCTCCTGTGAAAGTACCATCTACTGCACCTCATGCTAAAGAGGCTGATGGACAAGCTTCTGCTGCTGTAGCCTCTGGACAAGATAATTCTGGCCGTGAAGCACCATCTAGGCTATCTCCCACCGGCATATCTTCTTGGGCTAAAAATTTAAAACTTTCTCAATCATTTTCTGGATCCCAAGATGACCCGTCGAGTGGAAATGTTGGAAAATCAGCTTTTGCACGCATTACAAGTAATTTGGGATTGCGGTTGTCTCCAAAATCTCCTGCGGCAGATGACAATTCCAATGAACCAGCGGCACAATCTAATTTGTTTGGAAGTATTACGAAAGGTCTAGTTGACTCTTCAAAGAATGCGGTGAAAGCTGTGCAGGTTAAAGCACGGCATGTTGTTTCTCAAAATAAACGAAGATACCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAAAACATTATTGCAATGGGGTTCCCTGCTGGTGACATGAGCTCTGGGTTTTTTGGTTATGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTGATCAAGTTTTTTGAGACTCATCATAAGGATAAATACAAAGTATACAATCTTTGTTCGGAGCGGCTGTATGATGCATCATTGTTTGAGGGGAAGGTGGCTAGCTTCCCATTTGATGATCATAACTGTCCACCAATTCAACTGGTTATATCATTTTGTCAAAGTGCTTACTCATGGTTGAAAGAAGACATTGAGAATGTGGTGGTTGTCCACTGCAAGGCTGGAATGGCCAGGACAGGGTTGATGATTTCTAGTCTTCTACTATTCTTGAAGTTCTTCCCAACTGCTGAGGAGTCAATGGATTACTATAACCAGAAAAGATGTATCGATGGAAAAGGACTTGTTTTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGGATCTTGACTTACTTTAATGGCGAATGCCCACCTGCCCGCAGGTGCATGCTTAGAGGATTCCGGCTTCACCGATGCCCTTACTGGATCAGGCCCTCTATAACCGTCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCAAGGACCAAGGATCTTTTGCCAGAAGATTTTTGGTTTTCTGCACCAAAGAAGGGAGTGATGGTCTTTGCTTTGCCTGGCGAGCCTGGTCTCACAGAGTTGGCTGGGGATTTCAAAATCCATTTTCATGACCGCCAAGGAGATTTTTACTGTTGGTTAAACACAACCATGACAGAAAACAGGAAAGTTTTGAACACCGGTGATCTCGATGGCTTTGACAAGAGAAAATTACCTTCTCCAGGATTCCAGGTTGAAGTTGTGCTGTTGGATAATAATGGCAATGTTGTAACTTCCAACCCTGAAATTACAAAGAAATCAGACGAGAGTTCAAGTACCAGTCCTGCTCCTGCCCCAGTTGAGGTGAACACCCCCACACCAAATGCAGACAAAGAGTCAGGGGATGGGGATCATGACAAAGATGACGTATTTTCAGATGGTGAGGCAGATAATCCTGCTTCTTCAACAAGCAAGCAAACGAAGGCCCCTTCTGAAGCAGTTAAAACAGTAGCAAGTGCCTCCAGAGAATCTGAGGCAAACAAAATTTCAAATCAAATCACAAATATAACGCATGCAACAGAACAAGTTTCTTTGGGTAGTAAGACCTCTATGCCAAGTCATAGTACCAGTGAGCCAAAAAGTGACGTTGGTGGAAGAACGGTGTCCAATCTCGACGAGCCCAGCTCAGAAAGTGAATTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACGTTCGGAGATGATGAAGACTATGAAAGTGATTGA 1869 0.4302 MDPVPANVSIPPPVKVPSTAPHAKEADGQASAAVASGQDNSGREAPSRLSPTGISSWAKNLKLSQSFSGSQDDPSSGNVGKSAFARITSNLGLRLSPKSPAADDNSNEPAAQSNLFGSITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLVISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCIDGKGLVLPSQIRYVKYFERILTYFNGECPPARRCMLRGFRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKDLLPEDFWFSAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTGDLDGFDKRKLPSPGFQVEVVLLDNNGNVVTSNPEITKKSDESSSTSPAPAPVEVNTPTPNADKESGDGDHDKDDVFSDGEADNPASSTSKQTKAPSEAVKTVASASRESEANKISNQITNITHATEQVSLGSKTSMPSHSTSEPKSDVGGRTVSNLDEPSSESEFKAMAADASVFTFGDDEDYESD 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01474 622 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Car04g01474 622 MobiDBLite consensus disorder prediction 463 487 - -
Car04g01474 622 SMART PTEN_C2_2 331 459 IPR014020 -
Car04g01474 622 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 21 622 - -
Car04g01474 622 MobiDBLite consensus disorder prediction 463 603 - -
Car04g01474 622 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Car04g01474 622 MobiDBLite consensus disorder prediction 517 597 - -
Car04g01474 622 MobiDBLite consensus disorder prediction 1 18 - -
Car04g01474 622 CDD PTP_PTEN 157 322 IPR045101 GO:0016791
Car04g01474 622 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Car04g01474 622 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Car04g01474 622 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 21 622 - -
Car04g01474 622 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 261 300 IPR000387 GO:0016311|GO:0016791
Car04g01474 622 MobiDBLite consensus disorder prediction 94 113 - -
Car04g01474 622 MobiDBLite consensus disorder prediction 1 54 - -
Car04g01474 622 MobiDBLite consensus disorder prediction 33 54 - -
Car04g01474 622 MobiDBLite consensus disorder prediction 499 515 - -
Car04g01474 622 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01474 Car-Chr4 14965607 14971969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01474 19 622 Protein tyrosine phosphatase (PTP) family AT3G19420 68.167 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01474 K01110 - gmx:100784003 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01474 04 14965607 14971969 Car04g01474 04 14965607 14971969 ECH
Car08g00468 08 3924415 3930637 Car04g01474 04 14965607 14971969 PCT