Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01442 ATGACTGGTTCAACTGGAAATTCGATAAGTCAATACGATTGCACCACTGAGAAGATGGGAACTGAACATTGTGATTTGTCTGTAAAATCAGCTCAGATCGGCTCTGAATGTTTAGACAATGAACAAAGTGTGGTTGATACTGTGTTAACCAATTCTGTTATCGATGAAAAATCAAATCAAGATTATGTGAATATGACTGAGAATTCTGTTGTTCAACTGCCTGACCCAACTCATCATTACATAGAAAATACTTGTCAGACTTTAGAAGGTTCATGTCTTCAACAAAGTACCTCAGAACAAGTCCCTGTTTGGTTATGTGATGGTAAATTAGAAAACAAATGTCCTCAAAATGTTCAAAATGAAGCTGGAGAAATGAGTAATGCAGTAGCTGCCCTTGTTGTTGAAGAACAAACACAATCCGTTCCTGCTCAAGTTAATGTGGTATTGGATCCTCCTTCTGGAGATGTTGCAAAAAATGTTAGTTTTCAAAATGAACCTGGTGAAATGAGTGAGGCAGTAGCCGCTCTTGTTGTTGAAGAACAAACACAATCTGTTCCTGCTCAAGTTAACGTGGTATTGGATCCTCCCTCTGGAGATGTTGCGGAGAGTGTTAGTTTTCAAAATGAACTTGCTGAAATGAGTGATGCAGTAATTGACGTTGTTGAAGACCAAACACAGTCCGGTCCTGCTCAAGTGAACACAGATTCTGTAAATGAGCCACTGGATCCACCTTCTGGAGAGGTTGCAAAAATTGTTAATTTACAAAATGAACCTGGTGAAATGAGTGATGCAGTAATTGGCATTGTTGAATACCAAACACAATCCATTCCNNNNNNNNNNNNNNNTCCAGTGAACACATATTCTGTAAATGATCCATCGGATCCACCTTCTGAAGATGTTGTGAAAAATATTAGTTCCGATTGTTCGGAAAGAAAGTCTAAAAGCTCAGCTCATTTGCGATCGAGACACAAGGGTAAAAGTAACTCAAAATTATCAAAGAAGTATATTTTAAGGTCGTTAGGAAGCAGTGACAGAGCTCTGCGATCGAGGACAAGAGATAAACCTAAAGATCCTGAACCAATTAATAATGTTGTTGATGTTAGTAATGATGCAATGAAGACGAAACGTGGgaagaagaagaagaagaaaaggccaagaaAGGAGGGAATTAATGATCAATATTCTAAAATCAGAGCTCATCTGAGATATTTGTTGAACCGCATAAGCTACGAACAAAACTTAATTGATGCTTATTCTGGCGAGGGCTGGAAAGGATACAGTTTGGAAAAATTAAAGCCTGAGAAGGAGATTCAACGGGCTAAATCTGAAATTCTTCGACGAAAATTAAAAATTAGGGATCTATTTCAAAACTTGGATTCATTGTGTGCTGAAGGAAGGCTTCCTGAATCTTTGTTTGATTCCAAGGGGGAGATTGATAGTGAGGATATATTCTGTGCAAAATGCCAGACCAAAGTGTTGGGCACTGATAATGATATAATTCTCTGTGACGGTGCTTGTGACCGTGGATTTCACCAGCTCTGTTTAGATCCTCCATTGTTAACTGAAGACATTCCACCTGGTGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATCGAACTTGTTAATGACTTGTTAGGGACAAATCTCTCTCTTACCAACACGTGGGAGAGGGTTTTTCCTGAAGCAGCTACAGCTGCTGGAAGTATCTTGGATCACAACTCGGGACTTCCTTCAGACGATTCTGAGGATGATGATTATAATCCTAATGGCCCAGAGGATGTGGAGGTAGAGGATGCAGAAGTTGAAGGAGACGAATCAAGTTCTGACGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCACGCCACGAGGATCAATACTTGGGTCTTCCTTCTGAAGATTCAGAGGATGATGATTTTGATCCTGATGCTCCAGATCTTGGTGGTAAAGTCACTGAAGAAAGCTCGAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTACAATTAAGGATAACATGTCCACTGGACAGGATGGTGATATTACATCTCCATTGTTAGATGATGTTAAGAACTTAAAAGGTTTTAGCAGACAAAACCATAAAGTTCGTAAGAAGCCATCTATGGCTGATGAACTGTCATCTTTACTAAAGTCAGATCTCGGCCAAGAGGATATCACTCCTATTACTGCAAAAAGAAATGTGGAAAGGTTGGACTACCAAAAGCTGTATGAAGAAACATACCAAAGTGATACTAGTGATGATGAAGATTGGGATGCCTCTGCTACTCCAAGTAGAAAAAAGAAACTCGCAGGCAAGATGACTCCAGTGTCACCAAATGGAAATGCCTCAAATAATTCCCGACATACTGCTTCGAGGAACACCCAGCAGCATAAAGTTGAAAATACAAATAATTCACCCACCAAAACACTTGAAGGATGCACGAAATCTGGTTCCAGGGATAAAAGACGTGGATTGACATACAAAAGACTCGGAGAAGCTGTTGTTCAGAGACTTTACAAATCTTTCAAAGAAAATCAATATCCAGAACGAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTCACTTTTCAACAGGTTGACAAATGGTTTGGCAATACTCGATGGAGTTTCCGACATTCATCACATACGGAGGCCAGTCCAGGCAGTAATGCTTCGCAGCAGGCCACTGACAGTGGAGCTGAAAATAAAGAAGAGAGGGGTAATGCTTCGCAGCAGGCCACTGATAGCCCCGGAGTCGAAAATAAAGGAGAGGGGGAATGTGAATTAGTTTCCCAGGGGACTAGTAGAGAAAAATCAAGAACCCAGAGCTCTAAGAAAAGGAAGCGTTTGTCTGAGCCACAGGTATCTGAAGCAGGGCTGGTCGATATTGGCTCAGCTCCTGATTGTTCACCAAGAACTGTTACAGGCAATAAAATGAAGTCAAAGAAAGGGAAATGA 2988 0.4026 MTGSTGNSISQYDCTTEKMGTEHCDLSVKSAQIGSECLDNEQSVVDTVLTNSVIDEKSNQDYVNMTENSVVQLPDPTHHYIENTCQTLEGSCLQQSTSEQVPVWLCDGKLENKCPQNVQNEAGEMSNAVAALVVEEQTQSVPAQVNVVLDPPSGDVAKNVSFQNEPGEMSEAVAALVVEEQTQSVPAQVNVVLDPPSGDVAESVSFQNELAEMSDAVIDVVEDQTQSGPAQVNTDSVNEPLDPPSGEVAKIVNLQNEPGEMSDAVIGIVEYQTQSIXXXXXXPVNTYSVNDPSDPPSEDVVKNISSDCSERKSKSSAHLRSRHKGKSNSKLSKKYILRSLGSSDRALRSRTRDKPKDPEPINNVVDVSNDAMKTKRGKKKKKKRPRKEGINDQYSKIRAHLRYLLNRISYEQNLIDAYSGEGWKGYSLEKLKPEKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGRLPESLFDSKGEIDSEDIFCAKCQTKVLGTDNDIILCDGACDRGFHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIELVNDLLGTNLSLTNTWERVFPEAATAAGSILDHNSGLPSDDSEDDDYNPNGPEDVEVEDAEVEGDESSSDESEYASASEKLEDSRHEDQYLGLPSEDSEDDDFDPDAPDLGGKVTEESSSSDFTSDSEDLAATIKDNMSTGQDGDITSPLLDDVKNLKGFSRQNHKVRKKPSMADELSSLLKSDLGQEDITPITAKRNVERLDYQKLYEETYQSDTSDDEDWDASATPSRKKKLAGKMTPVSPNGNASNNSRHTASRNTQQHKVENTNNSPTKTLEGCTKSGSRDKRRGLTYKRLGEAVVQRLYKSFKENQYPERTTKESLAQELGLTFQQVDKWFGNTRWSFRHSSHTEASPGSNASQQATDSGAENKEERGNASQQATDSPGVENKGEGECELVSQGTSREKSRTQSSKKRKRLSEPQVSEAGLVDIGSAPDCSPRTVTGNKMKSKKGK 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01442 995 Gene3D - 835 901 - -
Car04g01442 995 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 271 958 - -
Car04g01442 995 ProSiteProfiles Zinc finger PHD-type profile. 482 539 IPR019787 -
Car04g01442 995 MobiDBLite consensus disorder prediction 583 616 - -
Car04g01442 995 MobiDBLite consensus disorder prediction 316 331 - -
Car04g01442 995 MobiDBLite consensus disorder prediction 658 690 - -
Car04g01442 995 MobiDBLite consensus disorder prediction 222 240 - -
Car04g01442 995 Pfam PHD-finger 484 539 IPR019787 -
Car04g01442 995 MobiDBLite consensus disorder prediction 882 908 - -
Car04g01442 995 SMART PHD_3 484 537 IPR001965 -
Car04g01442 995 MobiDBLite consensus disorder prediction 882 995 - -
Car04g01442 995 MobiDBLite consensus disorder prediction 282 392 - -
Car04g01442 995 MobiDBLite consensus disorder prediction 222 246 - -
Car04g01442 995 CDD homeodomain 828 891 IPR001356 GO:0003677
Car04g01442 995 MobiDBLite consensus disorder prediction 785 822 - -
Car04g01442 995 ProSitePatterns Zinc finger PHD-type signature. 485 536 IPR019786 -
Car04g01442 995 Pfam Homeodomain 842 886 IPR001356 GO:0003677
Car04g01442 995 PANTHER HOMEOBOX PROTEIN HAT3.1 271 958 - -
Car04g01442 995 MobiDBLite consensus disorder prediction 282 303 - -
Car04g01442 995 SUPERFAMILY Homeodomain-like 830 891 IPR009057 -
Car04g01442 995 CDD PHD_PRHA_like 484 536 IPR045876 -
Car04g01442 995 MobiDBLite consensus disorder prediction 345 360 - -
Car04g01442 995 SMART HOX_1 832 894 IPR001356 GO:0003677
Car04g01442 995 MobiDBLite consensus disorder prediction 617 637 - -
Car04g01442 995 MobiDBLite consensus disorder prediction 574 836 - -
Car04g01442 995 MobiDBLite consensus disorder prediction 738 752 - -
Car04g01442 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 547 IPR013083 -
Car04g01442 995 ProSiteProfiles 'Homeobox' domain profile. 830 890 IPR001356 GO:0003677
Car04g01442 995 SUPERFAMILY FYVE/PHD zinc finger 474 542 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01442 Car-Chr4 14672378 14680596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01442 371 887 Homeobox Transcription Factor Family AT3G19510 46.777 5.14e-126 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Car04g01442 PHD 2.4e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01442 - - cam:101500744 1887.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01442 04 14672378 14680596 Car04g01442 04 14672378 14680596 ECH