Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01434 ATGAATAGCTCTAAAGGAAATCTCTCGATAGAAGATGCAATAGCATATGTAACTTCAGTCAAAGTTAGGTTTCAAGAAAAGAGGGAAAATTACGATCAATTTTTAAAGGTCCTGTGTGATTTTAGGGCTGAAAGAATTGATGCAAGAGGTGTCAAATCAAGAGTGAATGAGTTGTTTAAAGGTCATAACGATTTAATTTTGGGTTTCAATATTTTCATGCCAACTGAATATGAAATTAAACTTCCTTTGGATTTGGATGATGAACAACTACAACAAGGTCATGGATTAGGGTCAGATGATGCACTAGCGTTTCTCAGAGTAGTAAAAGACGTGTTTAAAGATGAGATGGGGAAGTATGATGAGTTTTTAAAAGTGTTAAGGGATTTTAGGAATCGAGTAATCGATAGAAGAGATGTTGCAGAAAGAGTGAAGGAGATGTTTAAAGGGCATCTAGATTTAATTTTTGGATTCAACGCCTTCTTGCCAAAGGATTATCAAATCACACTTACGTCTCAGCTTGACTGTCATGAGACTGGTTAG 540 0.3556 MNSSKGNLSIEDAIAYVTSVKVRFQEKRENYDQFLKVLCDFRAERIDARGVKSRVNELFKGHNDLILGFNIFMPTEYEIKLPLDLDDEQLQQGHGLGSDDALAFLRVVKDVFKDEMGKYDEFLKVLRDFRNRVIDRRDVAERVKEMFKGHLDLIFGFNAFLPKDYQITLTSQLDCHETG 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01434 179 ProSiteProfiles PAH domain profile. 81 164 IPR003822 GO:0006355
Car04g01434 179 PANTHER PROTEIN, PUTATIVE-RELATED 3 135 - -
Car04g01434 179 SUPERFAMILY PAH2 domain 96 163 IPR036600 GO:0006355
Car04g01434 179 PANTHER SIN3B-RELATED 98 172 IPR039774 GO:0003714
Car04g01434 179 PANTHER SIN3B-RELATED 3 135 IPR039774 GO:0003714
Car04g01434 179 Pfam Paired amphipathic helix repeat 29 72 IPR003822 GO:0006355
Car04g01434 179 Pfam Paired amphipathic helix repeat 118 161 IPR003822 GO:0006355
Car04g01434 179 Gene3D Paired amphipathic helix 100 162 IPR036600 GO:0006355
Car04g01434 179 Gene3D Paired amphipathic helix 12 74 IPR036600 GO:0006355
Car04g01434 179 PANTHER PROTEIN, PUTATIVE-RELATED 98 172 - -
Car04g01434 179 ProSiteProfiles PAH domain profile. 6 76 IPR003822 GO:0006355
Car04g01434 179 SUPERFAMILY PAH2 domain 4 75 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01434 Car-Chr4 14599349 14599888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01434 6 88 WRKY Transcription Factor Family AT4G12020 41.573 8.27e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car04g01434 PAH 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01434 K11644 - cam:101497850 344.354