Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01419 ATGGAATCTGTTCATTTGATTGCTGAAGAATGGAGTTCACTTAGTGGACAGTACACAACTGAGGAATCTGATTTCATGTCTGAGTTTCTTGCTGGTAATAGTAACTATTCTGTCTGTGGAAATGGAAACACCAATTTTGGTATGCCAACTTCTCTTTGGCCTACTCATGAATCCACAATACTCACAGTTACTGAAACCAATACCAATGGAACCTATTCCTTTGATCATGCAACAAACATTGACTCCTTGTCTATGCTTTTTTGCTTAGGAGATACTTTTCAATGTGATCAGAACTTAAGCATACAGATAAATGATTGCATTGATGAAGGGTCAGGTTTAGAGCCAGTGAAACTTGTTCTTGCTGACAACAACAATTTGCAAGCTAAGAGAGAGCATGAAATTATGGTTTCAGAAGAGAATATAACCAAAAACATTGAGAATCCTGCAAAAAGACTTAGAAGCTCAATAGAGGTGTCAAAAAACATGAGGAATGTTAGCAAGTGTAAAAAATCTGATTATGTGAACAATGAAGAGGATCTACAGTGGAATGGCTCTAGCAACTGTTTTTCTCAGGTTGATTCAAATGTTTATGTGGAGCTAAATGGAGGAACATGTAATTCAAGTTTGATTCCAAAAGAACCTCAAGCACCTAGTTTATGTAAAAAATCAAGAGCAACAAGTGGTCCTGCCACTGATGCACAGAGCATTTATGCAAGAAGGAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCTTGCAAACACTTGTGCCAAATGGAACTAAGGTGGATATTAGCACTATGCTTGAGGAAGCTGTGGAATATGTGAAGTTTTTGCAGCTTCAAATTAAGCTTCTGAGCTCTGATGATATGTGGATGTATGCTCCAATTGCTTACAATGGAATGAACATTGGATTAGACCTCAACTATACTTCTTCAACTAAAGGAAGATCATGA 954 0.369 MESVHLIAEEWSSLSGQYTTEESDFMSEFLAGNSNYSVCGNGNTNFGMPTSLWPTHESTILTVTETNTNGTYSFDHATNIDSLSMLFCLGDTFQCDQNLSIQINDCIDEGSGLEPVKLVLADNNNLQAKREHEIMVSEENITKNIENPAKRLRSSIEVSKNMRNVSKCKKSDYVNNEEDLQWNGSSNCFSQVDSNVYVELNGGTCNSSLIPKEPQAPSLCKKSRATSGPATDAQSIYARRRRERINERLKILQTLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDMWMYAPIAYNGMNIGLDLNYTSSTKGRS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01419 317 SMART finulus 235 284 IPR011598 GO:0046983
Car04g01419 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 295 IPR036638 GO:0046983
Car04g01419 317 Pfam Helix-loop-helix DNA-binding domain 239 279 IPR011598 GO:0046983
Car04g01419 317 Gene3D - 231 294 IPR036638 GO:0046983
Car04g01419 317 PANTHER TRANSCRIPTION FACTOR BHLH54 46 310 - -
Car04g01419 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 278 IPR011598 GO:0046983
Car04g01419 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01419 Car-Chr4 14446589 14448403 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01419 10 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 36.975 9.59e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g01419 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01419 - - gmx:100816788 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01419 04 14446589 14448403 Car04g01419 04 14446589 14448403 ECH
Car08g00029 08 277547 278839 Car04g01419 04 14446589 14448403 PCT