Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01418 ATGGATTCTTCTGAGCAAACTTGTGAAGAATGGAGTTCTCTAAGTGGATTTTACACAGCTGAGGAAGCTGATTTTATGGACCACTTACTTGATAACTTCCAAGTCCCTCAATACCATTATGGAAATTTCAATTTGGAAATTCCATCTACATTATGGCCTGGACATCAATCTACAATAATGATGAATAATAATACTTCACATTTTCCTCAAAATGCTGATAATAGTAACACTGATTTTTTGAGTTTTTTACAAGCAACCAACTCTATTGCTGATACTACCAACATTGGTCAAGAGGTTATTGGTGACAAGAACTTTCAAGCTCACAAGGTTTTTGAACAAGTGTTGCTTTCTGAATCAGTTGAAGAGGGTGTTAACAACAACCTGGAAAATTCAGGAAAAAGATCTAGGAGCTTAATGAAGGTACAAAAGAACAATGGAAATGTTAAATCTAGAAAGAAACTAAAATCTTCTTTCATAAGCAACACTGAAGAGGATGTAAGTCCTGATCTTAAGGAGCAGAACTTGAGCTCAGAGGATGATGAGTTCAATGCTTCACAGGAGCTAAAAGCAGGAGGGTCTTCAATCTCGAAGAACAATTCGAAAGCTCAGAAGTCAAAGGGAAAATCAAAATCTAATAGAGGTTCTTCTGCCATTGATCCACAGGGCGTCTATGCAAAAAGAAGAAGAGAGAGAATAAATGAAAGATTGAGAATCCTACAAAGCCTAGTCCCTAATGGAACTAAGGTGGATATAAGCACCATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTAAGCTCTGATGATCTCTGGATGTATTCTCCCATTGCGTACAATGGAATGAACATTGGCCTATAA 879 0.3709 MDSSEQTCEEWSSLSGFYTAEEADFMDHLLDNFQVPQYHYGNFNLEIPSTLWPGHQSTIMMNNNTSHFPQNADNSNTDFLSFLQATNSIADTTNIGQEVIGDKNFQAHKVFEQVLLSESVEEGVNNNLENSGKRSRSLMKVQKNNGNVKSRKKLKSSFISNTEEDVSPDLKEQNLSSEDDEFNASQELKAGGSSISKNNSKAQKSKGKSKSNRGSSAIDPQGVYAKRRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYSPIAYNGMNIGL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01418 292 MobiDBLite consensus disorder prediction 165 185 - -
Car04g01418 292 MobiDBLite consensus disorder prediction 187 202 - -
Car04g01418 292 MobiDBLite consensus disorder prediction 125 164 - -
Car04g01418 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 115 289 - -
Car04g01418 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 281 IPR036638 GO:0046983
Car04g01418 292 Pfam Helix-loop-helix DNA-binding domain 226 266 IPR011598 GO:0046983
Car04g01418 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 216 265 IPR011598 GO:0046983
Car04g01418 292 SMART finulus 222 271 IPR011598 GO:0046983
Car04g01418 292 CDD bHLH_AtIND_like 219 279 - -
Car04g01418 292 PANTHER TRANSCRIPTION FACTOR BHLH54 115 289 - -
Car04g01418 292 Gene3D - 224 274 IPR036638 GO:0046983
Car04g01418 292 MobiDBLite consensus disorder prediction 125 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01418 Car-Chr4 14441050 14442826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01418 10 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 38.576 1.15e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g01418 HLH 5.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01418 - - ccaj:109795401 317.775