Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01390 ATGAAACTCCACTTTGCAAATCCAATGGGTTCCGGTGATCACTCGAGTGCAGTAGCAATAGCATACGTCAATGCAGTAAGAGATGTATTTCAAGATAAGAAAGAAAATTTTGACGAATTTTTAAAACTCGTAAGTGATTTTGCGGCTAAAAGAATTGATGTGAGAGGTGTCAAAGCTAGGGTGAATCAGTTGTTTAAAGGGCATAAAGATTTGATTTTGGGATTCAACATATTCATGCCTACGGAATATGAAATCTCACTTCCATTGGATGATAATGATGAACAAGAAGGTTATGGATTAGCGTTTATAAATGCAAAAGCGCATGGATTAGTGTTTAAAGATGCAAAAGCGTACATCGATGCAGTCAGAGTTGCGTTTGAAGATAGGAGGGAAAAGTATGCTGAATTTTTAGAAGTCCTAAGTGATTACAAAGCTGAAAGAATTGATATACAAGGCGTCAAAGCAAGACTGGTGGAGTTGTTTAAAGGTCATGAAGATTTAATTTTGGGATTCAATACCTTCTTTACAAAGGAATATGAAACCTCACTTCCATTAGATGATGACGAACAAAAAGGTGATGAATTAGCGTTTAAAGATGCAACAGCGTATGTCGATGCAGTTAAAGTCGTGTTTAAAGATAAAAGCAAAGAGTATAATGAATTTTTAAAAGTCGTGTCGGATTACCGTGCCGAAAGAATTGATTTAAGAGGTGTGAAAGCAAGAGTGGAGTATCTGTTTAAAGGCCATAAAGATTTAATTTTGGGATTCAACATCTTCCTGCCAAAGGAATATCAAATCACACTTCCATTTGAGTTTGAGACTGGGGAAGATGTGAAGAATGTAGCAAAAAACTGTGAACTTCCTTGGGATGTGCTTGATATCATTTCCAAAAGAATTGATTTTGACGACCTTTTTCAATTTGCTTGTGTGTGCAAGAATTGGAGGGCATTTCATAAAATTTATTGGAGAAATTTCTTGGCATTCCAAGAACCATTAATTGTTCAAAAGTCTTCCCATGTTAAGAAATGTTTTTCCTTCATCAGCATACCTGACCAAAAAGTTTATCACTCAAAGAAAATCAATTATTTCTGGCACTTTGCCTATTCTGGGTCTTCTAGTGGATATCTGATCATGACAGGGAAAAATAATTCATTTTTGCTAATGAATCCATTTACAAGAAGAAAGATGGTAATCAATACCTCAGCCTTTAAAGTTAATGTTTCTGATTTTGCTTACCGTGTCTTACTTGCTTTTGGCAAAGACTCTGAGGATTTTGTCTTAGTGGCTTTATGTAAAAGTTCTGAAAGTTTACATGTTTATCAATCTCGGAATTTTGGTTGGGTTACTTATACAACAATGGAAAATCCATGGAAGGTTGTTGACTTTGTTGTTTTGCATAATACTATATATGTTGTGACTGACAAGGCCAACATAGGGGTACTCAGCTTGAATTCTGCAAATATAAAATTTTTAGAATTGAAGAGTACTCCGAGGGTAACTTCTTCTTCACACCTAAGGTTGGTTAGTTGTGATGAACAACTTTTAGTGATTCATATTACGTCCGGGGCAGTATTGAATGTGTACAAGATAGACTTTTCAACTATGGATTATGTCAAGTTAGAAACTTTAGGTGACATTGCATTATTTTATACTTCGGGAGAAAACTACTGTGCATTGAGCAACCCAAGCAGGTGGGGTTATGAAAGCAACTCTTTGTATGCGATCAATCTTTCATCTACAAAATGCAGTGTGTATCTAGGGGATGACAACAAGCTACCAAAATGCATTAGACCCGATAGACTTCAAAATCCTCCTAGAACAGGACCCTACTTGTTGGATTGGTGTTTTAGACATCTACACTATGAGGTAGATTATTCTCTAGTTGAGTAA 1890 0.3582 MKLHFANPMGSGDHSSAVAIAYVNAVRDVFQDKKENFDEFLKLVSDFAAKRIDVRGVKARVNQLFKGHKDLILGFNIFMPTEYEISLPLDDNDEQEGYGLAFINAKAHGLVFKDAKAYIDAVRVAFEDRREKYAEFLEVLSDYKAERIDIQGVKARLVELFKGHEDLILGFNTFFTKEYETSLPLDDDEQKGDELAFKDATAYVDAVKVVFKDKSKEYNEFLKVVSDYRAERIDLRGVKARVEYLFKGHKDLILGFNIFLPKEYQITLPFEFETGEDVKNVAKNCELPWDVLDIISKRIDFDDLFQFACVCKNWRAFHKIYWRNFLAFQEPLIVQKSSHVKKCFSFISIPDQKVYHSKKINYFWHFAYSGSSSGYLIMTGKNNSFLLMNPFTRRKMVINTSAFKVNVSDFAYRVLLAFGKDSEDFVLVALCKSSESLHVYQSRNFGWVTYTTMENPWKVVDFVVLHNTIYVVTDKANIGVLSLNSANIKFLELKSTPRVTSSSHLRLVSCDEQLLVIHITSGAVLNVYKIDFSTMDYVKLETLGDIALFYTSGENYCALSNPSRWGYESNSLYAINLSSTKCSVYLGDDNKLPKCIRPDRLQNPPRTGPYLLDWCFRHLHYEVDYSLVE 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01390 629 Pfam F-box domain 286 316 IPR001810 GO:0005515
Car04g01390 629 Gene3D Paired amphipathic helix 199 261 IPR036600 GO:0006355
Car04g01390 629 Gene3D Paired amphipathic helix 114 175 IPR036600 GO:0006355
Car04g01390 629 Gene3D Paired amphipathic helix 19 80 IPR036600 GO:0006355
Car04g01390 629 ProSiteProfiles PAH domain profile. 193 263 IPR003822 GO:0006355
Car04g01390 629 ProSiteProfiles PAH domain profile. 108 178 IPR003822 GO:0006355
Car04g01390 629 ProSiteProfiles F-box domain profile. 281 325 IPR001810 GO:0005515
Car04g01390 629 SUPERFAMILY PAH2 domain 13 81 IPR036600 GO:0006355
Car04g01390 629 SUPERFAMILY PAH2 domain 191 262 IPR036600 GO:0006355
Car04g01390 629 SUPERFAMILY F-box domain 286 365 IPR036047 GO:0005515
Car04g01390 629 PANTHER OS06G0113600 PROTEIN 280 624 - -
Car04g01390 629 Pfam Paired amphipathic helix repeat 36 78 IPR003822 GO:0006355
Car04g01390 629 Pfam Paired amphipathic helix repeat 131 175 IPR003822 GO:0006355
Car04g01390 629 Pfam Paired amphipathic helix repeat 218 260 IPR003822 GO:0006355
Car04g01390 629 PANTHER OS06G0113600 PROTEIN 280 624 - -
Car04g01390 629 SUPERFAMILY PAH2 domain 110 176 IPR036600 GO:0006355
Car04g01390 629 ProSiteProfiles PAH domain profile. 7 82 IPR003822 GO:0006355
Car04g01390 629 SMART fbox_2 287 325 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01390 Car-Chr4 14155891 14159637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01390 12 91 WRKY Transcription Factor Family AT4G12020 44.444 1.28e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car04g01390 PAH 3.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01390 K11644 - cam:101488742 1276.15