Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01385 ATGTCGACTAGAAGGAAAAGCCGTGGTCGCCAAAAGGTCGAGATGAAAAAGATGAGCAATGAGAGCAACCTGCAAGTGACTTTCTCCAAGCACCGTAGTGGTCTCTTCAAAAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCAAAAGTTGCTCTTGTTGTTTTCTCACCTGCCGAGAAAGTATTTTCCTTTGATCACCCCAATGTTGATATAGTCATAGACCGTTATCTCTCACTGGCCTTGCCCCAACACAATGGCACTATGCAATTTATTGAGACTCATCATAGTGCCAATGTGTGTGAGCTCAATAAAACCGTCACTCAAGCCATTAACCAGCTCCACGTTGAGAAAAAGTGTGGCGATGAGCTGAACAATTCGTGCAAGGCGACTGAGGCTCAGTTTTGGTCGGCTTGTCCTATTGATGGAATGAATAGAACCCAACTTGAACTTTTCAAGAAGGCTTTGAAGGAGTTGAAGAAACTTGTTGCTCAACATGTTGAAAGGATTGTGATTCACGGTGCATCTACCCAAACCCTTCCATTCTTTCTTGAAAATTCTTTCACCTCTAATAACTCTGTCCCTCCTCATCAACAACAAGTTCAAATGTATCCACTCCAATTTTTTCAAAACCCTGTTACGCCACCACCTCATTTGTTTGACTTCAACAATATGGGAGTAGGATATGGGCCCACCAAATTCTTTTGA 705 0.4298 MSTRRKSRGRQKVEMKKMSNESNLQVTFSKHRSGLFKKASELCTLCGAKVALVVFSPAEKVFSFDHPNVDIVIDRYLSLALPQHNGTMQFIETHHSANVCELNKTVTQAINQLHVEKKCGDELNNSCKATEAQFWSACPIDGMNRTQLELFKKALKELKKLVAQHVERIVIHGASTQTLPFFLENSFTSNNSVPPHQQQVQMYPLQFFQNPVTPPPHLFDFNNMGVGYGPTKFF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01385 234 Gene3D - 88 178 - -
Car04g01385 234 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Car04g01385 234 PANTHER MADS BOX PROTEIN 7 193 - -
Car04g01385 234 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 193 - -
Car04g01385 234 Coils Coil 148 168 - -
Car04g01385 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Car04g01385 234 MobiDBLite consensus disorder prediction 1 21 - -
Car04g01385 234 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Car04g01385 234 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Car04g01385 234 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Car04g01385 234 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Car04g01385 234 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Car04g01385 234 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Car04g01385 234 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01385 Car-Chr4 14095852 14096556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01385 5 168 Type I MADS-box Gene Family AT5G60440 56.548 1.14e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car04g01385 SRF-TF 7.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01385 - - mtr:MTR_1g105905 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01385 04 14095852 14096556 Car04g01385 04 14095852 14096556 ECH