Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01383 ATGTCGACCGGAAGGAAAAGTCGTGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAATGAGAGCAATCTACAAGTGACTTTCTCCAAGCGTCGTAGTGGTCTCTTCAAAAAAGCTAGTGAGCTTTGTACCCTTTGCGGTGCAGAAGTTGTTCTTATTGTTTTCTCACCTGGTGAGAAAGTATTTTCGTTTGGTCACTCCAATGTTGATACGATCATTGACCGTTATCTCACGCGGGTCCCGCTCCAACACATTGGAACTATGCAGTTCATTGAGGCTCATCGCAATGCTAACGTGTGTGGGCTCAATGAAACCCTCACTCAAGCCAATAACCAGCTCGACGCTGAGAAAAGGCATGGCGACGAGCTAAGCCATTTGCGTAAGACGACCGAGGCTCAATTTTGGTGGGCTTGTCCTATTGATGTGATGAGTAGGGCTCAACTTGAACTTTTCAAGAAAGCTTTGGAGGAGTTGAAGAAACTTGTTGCTCAACATGCTGATAGGATTATGATTCAAGGTGCACCTCCCCAAACCCTTCAATTTTTTGTTGGAAATGCTTCCACCTCTAATAACGCTATCCATCCTCATCAACAACAACAAATTCAAATGTATCCACCCCAATTTTTTCAAAACCCTATCATGCAACCTCATTGGTCTGGCTTCAACAATACGGGAGGAGGATATGGGTCCACCTAA 696 0.4468 MSTGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAEVVLIVFSPGEKVFSFGHSNVDTIIDRYLTRVPLQHIGTMQFIEAHRNANVCGLNETLTQANNQLDAEKRHGDELSHLRKTTEAQFWWACPIDVMSRAQLELFKKALEELKKLVAQHADRIMIQGAPPQTLQFFVGNASTSNNAIHPHQQQQIQMYPPQFFQNPIMQPHWSGFNNTGGGYGST 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01383 231 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Car04g01383 231 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Car04g01383 231 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Car04g01383 231 Coils Coil 148 168 - -
Car04g01383 231 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 192 - -
Car04g01383 231 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Car04g01383 231 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Car04g01383 231 PANTHER MADS BOX PROTEIN 7 192 - -
Car04g01383 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Car04g01383 231 Gene3D - 88 182 - -
Car04g01383 231 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Car04g01383 231 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Car04g01383 231 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01383 Car-Chr4 14086031 14086726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01383 5 192 Type I MADS-box Gene Family AT5G60440 57.292 1.24e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car04g01383 SRF-TF 4.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01383 - - mtr:MTR_1g105905 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01383 04 14086031 14086726 Car04g01383 04 14086031 14086726 ECH