Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01382 ATGTCAACCGAAAAGAAAGGTCGTGGTCGCCAAAAGATCGAGATAAAAAAGATGAGCAATGAGAGCAACCTGCAAGTGACTTTCTCCAAGCGCCGTAGTGGTCTCTTCAAAAAAGCTAGTGAGCTTTGTACTCTTTGTGGTGCAGAAGTTGTTCTTATTGTTTTCTCACCTGGTGAGAAGGTATTTTCGTTTGGTCACCCTAATGTTGATACGGTCATTAACCGTTATCTCTCGCGGGTCCCACTCCAACACAATGGAACTATGCAATTCATTGAGGCTCATCGCAATGCTAACGTGCGTGAGCTCAATGAAGCCCTCACTCAAGCCAATAACCAACTCGACACTGAGAAAAAGCATGGCGACGAGCTAAGCCATTTGCGTAAGACGACCGAGGCTCAATTTTGGTGGGCTTGTCCTATTGATGTGATGAGTAAGGCTCAACTTGAAGTTTTCAAGAAAGCTTTGGAGGAGCTGAAGAAACTTGTTGCTCAACATGCAGATATGATTGTGATTCAAGGTGCACCTACCCAAACCCTTCCAATTTTTGTTGGAAATGCTTCTACCTCTAATAACGCTATCCATCCTCATCAACGACAAGTTCAAATGTATCCATCTCAATATTTTCAAAACCCTATGATGCAACCCCATTGGTTTGGCTTCAACAATACGGGAGGAGGATATGGGCCCACCGAATTCTTTTGA 702 0.4387 MSTEKKGRGRQKIEIKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAEVVLIVFSPGEKVFSFGHPNVDTVINRYLSRVPLQHNGTMQFIEAHRNANVRELNEALTQANNQLDTEKKHGDELSHLRKTTEAQFWWACPIDVMSKAQLEVFKKALEELKKLVAQHADMIVIQGAPTQTLPIFVGNASTSNNAIHPHQRQVQMYPSQYFQNPMMQPHWFGFNNTGGGYGPTEFF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01382 233 Coils Coil 96 119 - -
Car04g01382 233 SUPERFAMILY SRF-like 9 84 IPR036879 GO:0003677|GO:0046983
Car04g01382 233 Gene3D - 88 174 - -
Car04g01382 233 Coils Coil 148 168 - -
Car04g01382 233 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Car04g01382 233 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Car04g01382 233 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Car04g01382 233 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Car04g01382 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Car04g01382 233 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Car04g01382 233 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 192 - -
Car04g01382 233 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Car04g01382 233 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Car04g01382 233 PANTHER MADS BOX PROTEIN 7 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01382 Car-Chr4 14079292 14079993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01382 5 221 Type I MADS-box Gene Family AT5G60440 52.466 6.30e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car04g01382 SRF-TF 4.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01382 - - mtr:MTR_1g105905 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01382 04 14079292 14079993 Car04g01382 04 14079292 14079993 ECH