Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01381 ATGAATATGTTTCATCAAAAAAAGAAAACCACAGGACGCAAGAAGATTGAAATCAAGAAACTTGAGAAAGATTCAAACAAACAAGTCACATTCTCAAAAAGACGTTCAGGTTTATTCAAAAAAGTCAGCGAACTTTGCATTTTATGTAATGTTAATGTAGCCATCATTGTGTTTTCTCCTGCCGACAAATTATTCTGTTTTGGTCAACCTAACACCGACACAATCCTTAAAAGTTACCTTGAAGGAACCACTGAGTTTGAACATTCTAAGTTAACGGAAAATTCTTCTACCTATGAAGAGTACAATAGAGAATATGAAGAGGCTTTAAAAGGGTTGGAGATAGAAAAGAAGAAAATGGTGGAGGTTGAAAATTTGGCTAAGGTTTGGAACAAAGGTGATTGGTGGAATGAACCCATTGATGATATGAGTAGGGAAGAGCTTGAACAATTTATGGTGTCAATTTATGAGTTAAGAAGGAAGCTACTCGAAAGATTAGATGGACTTGTCATGATGCTTGCTATGTTGTAG 528 0.3523 MNMFHQKKKTTGRKKIEIKKLEKDSNKQVTFSKRRSGLFKKVSELCILCNVNVAIIVFSPADKLFCFGQPNTDTILKSYLEGTTEFEHSKLTENSSTYEEYNREYEEALKGLEIEKKKMVEVENLAKVWNKGDWWNEPIDDMSREELEQFMVSIYELRRKLLERLDGLVMMLAML 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01381 175 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Car04g01381 175 Gene3D - 23 108 IPR036879 GO:0003677|GO:0046983
Car04g01381 175 SUPERFAMILY SRF-like 12 91 IPR036879 GO:0003677|GO:0046983
Car04g01381 175 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Car04g01381 175 Coils Coil 95 122 - -
Car04g01381 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Car04g01381 175 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Car04g01381 175 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Car04g01381 175 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Car04g01381 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 171 - -
Car04g01381 175 PANTHER MADS BOX PROTEIN 8 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01381 Car-Chr4 14076949 14077476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01381 8 159 Type I MADS-box Gene Family AT5G60440 40.881 1.11e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car04g01381 SRF-TF 9.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01381 - - cam:101502875 278.485