Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01378 ATGGCTCTGTTTTGTTCCTCCTCCTTTCTTTTTTGTTGTGTTATATTTGTGATAATTGTACCGCAAGCCAAAGCCGGAGATCCTGTAACGTGTGATAACAACAGAGGCAACTACACAGCCAATAGCACATACGACAACAACCTCAGCACTCTTTTATCCACTTTCACTAATTCCCACACACAAATTAACTACGGTTTCTACAATTTCTCATATGGTGAAAACGAGCCAGACAAAGCATACGTTATTGGTGTGTGTCGTGGAGATGTTACCTCAAATGATTGTCGTACAAATCTAAACAAATCCATTGCCTATATTAGAGGTAAATGTCCAAACCAAAAAGAAGCAATAGTGTGGGGTGGTGATAACACTTTGTGGTACTCAAATCGGTCAATATTTGGTTCCATGGAAGTTTCGCCTACACAATATATTATCTATGAAAGGGATGTTAATGGAAATGAATACACAGAAGCACTTGGTAACTTGATGAGAAAACTTGAGCAAAAAGCTGCATCAGGTGACTCTCGTCGTAAGTATGCAGCAGATAATATGATTGGTGATAATTTTACAAAGGTAAACGGTTTTGTGCAGTGTATGCCTGATTTGTCAATGCAACAATGCACTGAATGTTTGGATCAAGCTATCAATGAAATCCCAATTTATTGTAAGGGCAAGATGGGAGGACATGTTCTTAAACCAAGTTGTCGCCTTAGATTTGATCCGTATACCTTCTACAGTCCTACCATTGAGTTAGACTTAAATGCTACAATACCTCCTGCACCTTCACCATCCACCAATAACACTTCTTCAGGACATAGCAAAATACGAGTTGTTATCGCCACTGCAGTGCCAGTTATTGTGATTTTGGTAGTGCTAAGTTTTATTTGCATTAACTTAAGAGTGAGAAAGGCAAAACAAAATTTTGAAGATGATGATGAAGACGAAATAACGATTGACGAGTCATTGCACTTTAACTTTGATACCGTGCGAATTGCTACAAGAGATTTCTCTGATTCTAATACACTTGGACAGGGTGGATTTGGAGTGGTTTATATGGGAAAACTACCTAATGGACAAAAGATTGCCGTCAAAAGATTATCAATAGATTCTGCTCAAGGAGATGTGGAGTTTAAAAATGAAGTAAATTTAGTAGCCAAGCTTCAACATCGAAATTTAGTTAGGCTACTTGGTTTTAGTCTAGAAGGGAGAGAAAGACTACTTATTTATGAATTTGTTCCAAATAAAAGTCTTGATTACTTCATATTTGATCCAACGAGGAAGACACAATTGAACTGGGAAAAGCGCTACAATATTATAAAAGTGGATATATGGCACCTGAATATGCAATGCAAGGACTATTTTCGGTAA 1365 0.3744 MALFCSSSFLFCCVIFVIIVPQAKAGDPVTCDNNRGNYTANSTYDNNLSTLLSTFTNSHTQINYGFYNFSYGENEPDKAYVIGVCRGDVTSNDCRTNLNKSIAYIRGKCPNQKEAIVWGGDNTLWYSNRSIFGSMEVSPTQYIIYERDVNGNEYTEALGNLMRKLEQKAASGDSRRKYAADNMIGDNFTKVNGFVQCMPDLSMQQCTECLDQAINEIPIYCKGKMGGHVLKPSCRLRFDPYTFYSPTIELDLNATIPPAPSPSTNNTSSGHSKIRVVIATAVPVIVILVVLSFICINLRVRKAKQNFEDDDEDEITIDESLHFNFDTVRIATRDFSDSNTLGQGGFGVVYMGKLPNGQKIAVKRLSIDSAQGDVEFKNEVNLVAKLQHRNLVRLLGFSLEGRERLLIYEFVPNKSLDYFIFDPTRKTQLNWEKRYNIIKVDIWHLNMQCKDYFR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01378 454 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Car04g01378 454 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 439 - -
Car04g01378 454 Gene3D - 28 130 IPR038408 -
Car04g01378 454 Gene3D - 145 243 IPR038408 -
Car04g01378 454 ProSiteProfiles Protein kinase domain profile. 335 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01378 454 Pfam Salt stress response/antifungal 31 128 IPR002902 -
Car04g01378 454 Pfam Salt stress response/antifungal 151 239 IPR002902 -
Car04g01378 454 Gene3D Phosphorylase Kinase; domain 1 297 410 - -
Car04g01378 454 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 439 - -
Car04g01378 454 ProSiteProfiles Gnk2-homologous domain profile. 136 243 IPR002902 -
Car04g01378 454 Pfam Protein tyrosine and serine/threonine kinase 339 429 IPR001245 GO:0004672|GO:0006468
Car04g01378 454 SUPERFAMILY Protein kinase-like (PK-like) 319 438 IPR011009 -
Car04g01378 454 ProSiteProfiles Gnk2-homologous domain profile. 26 131 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01378 Car-Chr4 14057721 14061639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01378 34 438 Receptor kinase-like Gene Family AT4G21410 40.802 4.41e-102 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car04g01378 PK_Tyr_Ser-Thr 6.9e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01378 - - mtr:MTR_5g065130 504.597