Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01377 ATGCGTAAGCGTATCCTCAAATTCTTTAGAACAAAAATCCAAATGATTCTTCTTGCATCATTCTTAGTGCTCCTAAGCTTCACCACATTCGAAGCAGCTCCAGTATACAACTTCCACCATTGCACAGATTACCAAACTACCTATTACAAACCCAATTCAACTTTTCAAAATACCTTAAATACCCTTCTCTCTTCCCTCATCTCAAACGCCACCCTCCACAACGGTTTCTACTCCATCCACATACCCCTCCAAACCCCTAACGATTTAAAAGGACTTTTCCTCTGCCGTGCTGACGTCACCCCTTCCCTCTGTCAAAACTGTGTAACCGCCGCTGCCAACAATATTACGAAACTTTGCAACAACCAAACAGAGTCTATAATCTGGTACGATGAGTGCTTATTGCGTTACTCCAATGACACCGTCTTGAACCATATAGTTCCATCAACATATTTGGAATCTCAAGAGAGTGTTCCTCATTCAGAACGTACACAATTCAATGATTTTCTTCCAAGTTTTTTGAAGGGGGTAGTACAAGAAGCTGTGTATTCTCCTCAGAAATTTGCTGTGAAAGAAGCGAATTTCACGGATTCTATGAAATTCTATTCTTTGGCACAGTGTACACCTGATTTATCCACGTTTGACTGTAACACGTGTTTGCAAGGTGCTATTAGTACAATCAATGGAAAACGAGGAGCAAGATCACTTCTTCCTAGTTGTAATCTTCGATACGACTCGTATCAGTTTTACAATGTTTCTTCTGTTTCCACTCAACCACAACTTTCATCTCCTTCTTCAGGAAAAAGGAAAGTTTCTAttgttattgcggttgttgttccaattgttgttgctgtggtACTTTTCATTATTGGATGCTTATTCCTGCTTAAGAGGGAAAAAAATAAGTATAAGTATAATTCATTCATTCAGGGTTCATCCTCAATTCGGCGCGAGGATCTTAGCGATGTAGATTGTTTGCAATTTGACTTTGCCGCAGTTGAAGCTGCCACAAACTGTTTCTCGAATAAGAATAAGATTGGCGAAGGCGGATTTGGCGTTGTTTATAAGGGTATCCTTCCTAATGGACATGAGATAGCTGTGAAGAGGTTGTCGGCAACCTCACTGCAAGGTGTAATAGAATTCAGGAATGAAGCTTCCCTTGTGGCCAAGCTTCAACATAGAAATTTAGTGAGGCTGTTGGGATTTTGTTTGGAAGGGCGCGAGAAGATGCTTGTCTATGAATACATACCGAATAAAAGCCTTGATCGTTATCTATTTGATCCTGCAATGCAAAGGGAGTTAGACTGGTCAAGACGCTACAAGATTATAGTTGGCATCGCTCGAGGGATTCTTTATCTCCATGAAGACTCTCAACTTAGAATTATTCATCGTGATCTCAAAGCTAGCAATGTTCTATTAGACGAAAATATGAATCCAAAAATTTCAGATTTTGGGATGGCAAAAATTTTCCAAGCAGATCAAACTCAAGTAAATACAGGAAGGATAGTGGGGACTTAG 1515 0.3894 MRKRILKFFRTKIQMILLASFLVLLSFTTFEAAPVYNFHHCTDYQTTYYKPNSTFQNTLNTLLSSLISNATLHNGFYSIHIPLQTPNDLKGLFLCRADVTPSLCQNCVTAAANNITKLCNNQTESIIWYDECLLRYSNDTVLNHIVPSTYLESQESVPHSERTQFNDFLPSFLKGVVQEAVYSPQKFAVKEANFTDSMKFYSLAQCTPDLSTFDCNTCLQGAISTINGKRGARSLLPSCNLRYDSYQFYNVSSVSTQPQLSSPSSGKRKVSIVIAVVVPIVVAVVLFIIGCLFLLKREKNKYKYNSFIQGSSSIRREDLSDVDCLQFDFAAVEAATNCFSNKNKIGEGGFGVVYKGILPNGHEIAVKRLSATSLQGVIEFRNEASLVAKLQHRNLVRLLGFCLEGREKMLVYEYIPNKSLDRYLFDPAMQRELDWSRRYKIIVGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01377 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Car04g01377 504 Gene3D - 148 248 IPR038408 -
Car04g01377 504 Gene3D - 36 140 IPR038408 -
Car04g01377 504 ProSiteProfiles Gnk2-homologous domain profile. 147 248 IPR002902 -
Car04g01377 504 ProSiteProfiles Protein kinase domain profile. 339 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01377 504 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 21 504 - -
Car04g01377 504 ProSiteProfiles Gnk2-homologous domain profile. 36 141 IPR002902 -
Car04g01377 504 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 504 - -
Car04g01377 504 Pfam Protein tyrosine and serine/threonine kinase 341 497 IPR001245 GO:0004672|GO:0006468
Car04g01377 504 Gene3D Transferase(Phosphotransferase) domain 1 415 504 - -
Car04g01377 504 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Car04g01377 504 Pfam Salt stress response/antifungal 160 246 IPR002902 -
Car04g01377 504 Pfam Salt stress response/antifungal 41 138 IPR002902 -
Car04g01377 504 Gene3D Phosphorylase Kinase; domain 1 302 414 - -
Car04g01377 504 SMART serkin_6 339 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01377 504 SUPERFAMILY Protein kinase-like (PK-like) 320 504 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01377 Car-Chr4 14037914 14041542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01377 9 504 Receptor kinase-like Gene Family AT4G05200 46.139 1.85e-152 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car04g01377 PK_Tyr_Ser-Thr 1.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01377 - - cam:101512516 793.497