Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01358 ATGGAGCTACAAACATTACTCTCATCCCTGGGTATCGACGACATTTACTTCTCTGTCGTTTCCGatgacgaaaataaccctgtccctgtctccgatgacgaaaataaccctgtccctctctccgatgataaGTACGCTGAAGCCTTACAGTTTCAAGAAGCCTTAATGGCCTCTCTCATCACTGATCATCAAAACTCCTCTTTCTCTTCCTCCTCCTCCTCACCACCACCGCCGCCTCCAGCATTGCTCTGTATAGCCTCTCTCATCACTGATCATCAAAACTCCTCTTTCTCTTCCTCCTCCTCCTCACCACCACCGCCGCCTTCGGCATTGCCCTGTATAGCATCTTCATCAAAGTCTATTGTTGATGTTACTGTTCTCCCCAAAATGAAGTTCGCGACCGAAGAAGCAAGTGAGTCGTCTTCAATAATCATTTGCGAAATTTGTGCGGAAGCGAAGATGGTTGATGAAATGTTCAAGAGCCAGAAATGTTACCATTCGTTTTGTACTGAATGTGTAACAAAACACGTGGCAACAAAAATCCAAGAAAACATTACGGTTGTTCCTTGTCCTGGTTTGAATTGCAAGGGTTTGTTGGAGCTTGATGTTTGTAGAAGTTTGCTTCCAAAAGAAGTAATTGACAGGTGGGATGATGCCTTGTGTGAGGCGCTTTTACTATCTGTTCCTAAATTCTATTGTCCCTTTAAGGATTGTTCTGCAATGTTGCTTGATGAAAATGAAGGTGGAGAAGAAATCAGGGAATCTGAGTGTCCTTTTTGTCATAGATTGTTTTGTGCAACGTGTCATGTTCCTTGGCATCCTAGTGTTGATTGTGACGAGTTTCAGAAACTTAATGTGGATGAGAGAGGAATTCAAGATCTTCTTGTTAGAGAGCTTGCTAATCAGAAAAAATGGAAAAGGTGTCCCAAATGCAAATTCTACATCGAAAAATTTGAAGGCTGTTTGCATATCACATGCAGGTGCCGTTTTGAATTTTGCTATGCTTGCGGTGAAAAATGGACATCTAACCATGGTGGTTGCCAACGAAACTAG 1053 0.3979 MELQTLLSSLGIDDIYFSVVSDDENNPVPVSDDENNPVPLSDDKYAEALQFQEALMASLITDHQNSSFSSSSSSPPPPPPALLCIASLITDHQNSSFSSSSSSPPPPPSALPCIASSSKSIVDVTVLPKMKFATEEASESSSIIICEICAEAKMVDEMFKSQKCYHSFCTECVTKHVATKIQENITVVPCPGLNCKGLLELDVCRSLLPKEVIDRWDDALCEALLLSVPKFYCPFKDCSAMLLDENEGGEEIRESECPFCHRLFCATCHVPWHPSVDCDEFQKLNVDERGIQDLLVRELANQKKWKRCPKCKFYIEKFEGCLHITCRCRFEFCYACGEKWTSNHGGCQRN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01358 350 ProSitePatterns Zinc finger RING-type signature. 164 173 IPR017907 -
Car04g01358 350 SUPERFAMILY RING/U-box 218 283 - -
Car04g01358 350 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 39 338 - -
Car04g01358 350 Pfam IBR domain, a half RING-finger domain 225 278 IPR002867 -
Car04g01358 350 Pfam IBR domain, a half RING-finger domain 296 347 IPR002867 -
Car04g01358 350 SUPERFAMILY RING/U-box 141 223 - -
Car04g01358 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 224 IPR013083 -
Car04g01358 350 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 39 338 IPR031127 GO:0004842|GO:0016567
Car04g01358 350 SUPERFAMILY RING/U-box 289 348 - -
Car04g01358 350 ProSiteProfiles Zinc finger RING-type profile. 146 191 IPR001841 -
Car04g01358 350 ProSiteProfiles TRIAD supradomain profile. 142 350 IPR044066 -
Car04g01358 350 Gene3D - 274 350 - -
Car04g01358 350 SMART ibrneu5 214 278 IPR002867 -
Car04g01358 350 SMART ibrneu5 289 347 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01358 Car-Chr4 13892918 13894825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01358 117 337 C3H Transcription Factor Family AT2G19610 28.814 2.98e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01358 K11975 - qsu:112001859 352.829