Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01347 ATGTCCATGCCGTTAGATCAAGAGGACAATAACAAGGAGAAGGAACAACACACCAAAACACTCATCTGTGCCCTCAACTTTCTCTCTCGCGACGTTCCCCTCCCTCCTCATCTTCTCAACTCCGTCTCTTCCATCTATCATCACAACAACAATGGCGATGTAGAGAGTTCCAGAGATGATTTAATAACAGATCTTGAAGATGCACTATGGAGACAGCGCCCAAAGTGTGCGTCAGGTTTCAAATTGGAGGAAGCAATGGAAAACCGTCATCAAAGTCAGATTCGGCATCGGTTAAATGAGCTTGAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACCAAGTGCCTGCTTGAACTTTATGGACTGAAGTTAGCAGAGTTGCAGTCAAAGGTTCGGTGTGATGTGAGTTCTGAATACTGGCTCAACGTTGAATGTGCATATCCTGACAGGAAATTGTTTGATTGGGGAATGATGAGATTGCGTCGTCCATTATATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAGTTAAGGAAGAGACGGGATTCTGAGAGACTGTCAAGATTAGAAGAGGTGGAGAAAAATCATATAGAAACTACGAAAAGAAGGTTTTTTGCAGAAATACTAAATTCTGTCCGTGAGCTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAGAGACAAAGGGCAACCCGAGCTGAGAAATTGAGATTCCAAGCCTTGAAGGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTGGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACTTCAAAAATTCAGATGGTATTGAACCCTTGGAAGATTCCGAAGCTGATTTACCTGAGTCAGAGGCTTCGAAGAATGGAATTTCTAAGGAATCACCTCTTGATGAAGATATAGATGCGATAGATTCTGATCAAAATGGTGACTCTAGAGATTTACTTGAAGGTCAGCGACAATACAATTCTGCCATACATTCAATTCAGGAAAAGGTAACTGAACAACCGTCTATACTTCAAGGTGGAGAATTAAGATCATATCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGTATTTTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACGATTGCTCTCATAGCATACCTTATGGAATACAAAGGTGTGACTGGTCCCCACTTGATTGTTGCTCCGAAGGCTGTTTTGCCAAACTGGATCATTGAATTCTCAACATGGGTTCCTAGCATTACAACGATTCTTTATGATGGACGAATGGACGAGAGAAAAGCAATAAAGGAAGAATACTCAGGAGAGGGGAAGTTTAATGTTATGATAACACATTATGATCTTATAATGAGAGACAAAGCATTTCTCAAGAAAATTCAATGGAACTACCTAATTGTGGATGAAGGTCATCGGTTGAAGAATCACGAGTCTGTTCTGGCAAGAACCTTGGACAATAGCTATCACATCCAACGAAGACTTTTGTTGACTGGTACTCCGATTCAGAACAGTTTGCAGGAACTGTGGTCCCTGCTTAATTTTCTCCTTCCAAATATTTTCAACTCTGTTCAGAATTTCGAGGACTGGTTCAATGCCCCCTTTGCAGACCGAGTTGATGTTTCTCTATCAGATGAAGAACAGCTATTAATCATTCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAGGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGCGATATGTCAGCCTGGCAGAAAGTTTATTATCAACAAGTTACTGACGTAGGCAGAGTTGGTTTGGACAACGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACCATGCAACTCAGAAAGTGTTGTAACCATCCTTACCTCTTTGTGGGAGACTATGATATGTATAAATGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCCGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACACTCTCGAAATTTATTTACGACTTCATGATTTCAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAAGAAAGAGGCTCTCTACTACGGAAGTTCAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGGGCAGGCGGTCTTGGTTTGAACTTACAAACAGCAGATACAGTTATAATCTTTGACAGTGACTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTTCGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTCTAGAACGTGCAAAACAAAAAATGGGTATTGATGCCAAAGTCATTCAAGCAGGACTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAGATGTTGGAGGTGATTATGCGTCGAGGTTCAAGCTCACTTGGGGCAGATGTACCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAGAATTACAGATCACGTCTCATGGAAGAGCATGAATTGCCAGATTGGGTTTATGCTCCGATTAAAAAGGATGACAAGGCTAAAAGTTTCAACAGTGGTGTTACTGGAAAGCGAAAAAGAAAAGACGTGGTATATGCTGATACATTAAGTGAGCTACAATGGATGAAGGCCATGGAGAATGGGGAAGACATGTCAAAGCTTTCAGCTAAAGGGAAAAGAAGAGAGTCAAGAGATTACCTCTCATCTGACAGCATAGCACAAGCCAGTGATAATACAGGGGCAGATGAAAGCTTATTAGAGTCGAGGACTAAAATTGTCCCCATGGCGAGTGAGAGAACAAGTGAAGATAGTTTCCATGTCACTCCTTCCTCAAAGAGATTCAAGCCTGAAGGAACAAATTTCCAGAAACATGCTTATGAGGATGTCAGCGGAGGTGGTTTGAACCAGCACGTTTTCTCCTGGAATACTCACAAAAAGAAGAGATCAAGCCATCTTGGCCAGGGTTCAGTATCCGATAGGAGAGGGCAGACTTCAAATGGAAGAGCAAATTGGAACTGA 3270 0.4193 MSMPLDQEDNNKEKEQHTKTLICALNFLSRDVPLPPHLLNSVSSIYHHNNNGDVESSRDDLITDLEDALWRQRPKCASGFKLEEAMENRHQSQIRHRLNELEELPSSRGEDLQTKCLLELYGLKLAELQSKVRCDVSSEYWLNVECAYPDRKLFDWGMMRLRRPLYGVGDPFAMDADDQLRKRRDSERLSRLEEVEKNHIETTKRRFFAEILNSVRELQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDFKNSDGIEPLEDSEADLPESEASKNGISKESPLDEDIDAIDSDQNGDSRDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTIALIAYLMEYKGVTGPHLIVAPKAVLPNWIIEFSTWVPSITTILYDGRMDERKAIKEEYSGEGKFNVMITHYDLIMRDKAFLKKIQWNYLIVDEGHRLKNHESVLARTLDNSYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLSDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYKCKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEIYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEVIMRRGSSSLGADVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYAPIKKDDKAKSFNSGVTGKRKRKDVVYADTLSELQWMKAMENGEDMSKLSAKGKRRESRDYLSSDSIAQASDNTGADESLLESRTKIVPMASERTSEDSFHVTPSSKRFKPEGTNFQKHAYEDVSGGGLNQHVFSWNTHKKKRSSHLGQGSVSDRRGQTSNGRANWN 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01347 1089 CDD SF2_C_SNF 684 817 - -
Car04g01347 1089 Pfam SNF2-related domain 385 673 IPR000330 GO:0005524|GO:0140658
Car04g01347 1089 SMART SnAC_2 899 959 IPR029295 GO:0042393
Car04g01347 1089 MobiDBLite consensus disorder prediction 967 984 - -
Car04g01347 1089 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 696 857 IPR001650 -
Car04g01347 1089 Gene3D - 617 837 IPR027417 -
Car04g01347 1089 MobiDBLite consensus disorder prediction 1072 1089 - -
Car04g01347 1089 MobiDBLite consensus disorder prediction 1015 1034 - -
Car04g01347 1089 SMART helicmild6 722 806 IPR001650 -
Car04g01347 1089 Pfam Snf2-ATP coupling, chromatin remodelling complex 900 959 IPR029295 GO:0042393
Car04g01347 1089 Gene3D - 373 616 IPR038718 -
Car04g01347 1089 PANTHER ATP-DEPENDENT HELICASE BRM 12 1018 - -
Car04g01347 1089 PANTHER SNF2/RAD54 HELICASE FAMILY 12 1018 - -
Car04g01347 1089 Pfam Helicase conserved C-terminal domain 693 806 IPR001650 -
Car04g01347 1089 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 394 560 IPR014001 -
Car04g01347 1089 SMART ultradead3 378 571 IPR014001 -
Car04g01347 1089 MobiDBLite consensus disorder prediction 1060 1089 - -
Car04g01347 1089 MobiDBLite consensus disorder prediction 985 1002 - -
Car04g01347 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 607 IPR027417 -
Car04g01347 1089 MobiDBLite consensus disorder prediction 303 351 - -
Car04g01347 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 863 IPR027417 -
Car04g01347 1089 Coils Coil 897 917 - -
Car04g01347 1089 MobiDBLite consensus disorder prediction 967 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01347 Car-Chr4 13808953 13817564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01347 689 864 RAD5 or RAD16-like Gene Family AT5G43530 34.270 5.84e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car04g01347 SNF2_N 7.3e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01347 - - gmx:100786280 1893.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01347 04 13808953 13817564 Car04g01347 04 13808953 13817564 ECH