LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g01343	ATGATCCATCTAAAACAAATGCAGCACTTCAAATCCTCTACCACCTATGTTATTCTTTCCTTTGCACTAATTATAACAACAACTCAAGCAGCAACAGACCAAACCTTCATCCAGAGTTACTGTCCAAGTAAAAACACTTTTTCTCCAAACACTACCTACCAAACAAGCCTCAACAAACTTCTTTCTCTCCTTTCATCCAATTCCACCAACAAAAACGGCTTTTACTACACCACCACCACTAACAACCCCGAAAACACCGTATACGGCGCTTTCCTCTGCCGTGGAGATCTCAAACCAAACGAATGCAAAGACTGTGTTTCCATAGCATCAAAAGAAATCCTTCAACACTGTCCTAATGGAAAAGAATCAGTTGTTTGGTTAGCTGAATGCATGATACGTTACTCAAACGTTTCTTTCTTAAATGAAGCTTCTGAAGTTCCTGTTTTTGATCTCATGAACACTGGAAGTGTAATGGAGCAGAGCAGGTTCATGCAACTGTTAGCAGACACCATGAACGCCGCGGCGGCTGAGGCGGCAAACGGTGGAAGTGACAATAAGTTTGGAACAAAAGAAGCAAATTTTTCTAGCTTCCAAACTTTATACACACTTGCACAGTGTACACCTGATTTGTCAAAGTCAGGTTGTGAAAAATGTCTTACAATAGCAACTACACAATTACCCTCTTGCTGTAATGGAAAACAAGGTGGAAGAGTGCTTATTCCTAGTTGTAATATTAGGTATGAGTTTTATCCATTTTATCATGAGTTGAATGCTCCTGCTCCTGAAGAACCAAGGCCAAATTCACAAGGAAAGAAATCCAAGAATTCTATACTGATAATTGTTGCAATTGTAGCACCAATTGGGCTTGTTTTGCTGCTTACCTTGTTTGTCTACTGGATCCTATCTGAAGGGAAAAGAAAAAATTACAATTCAGTGACTGAAGAAAGTGTTCAAATCTCTAGGGTTGAATTCTTGCAATTTGATTTTGATACCATCGCCGCAGCCACGGACAACTTCAGTAATGAGAATAAATTAGGGGAAGGAGGATTTGGTGAGGTTTACAAGGGTATGCTATTTAATGGACAAGAGattgctgtgaagaggctgtcaagaagttctggccaaggcatagaagaattcaagaatgaggtggttttggtagccaaactacagcacagaaatcttgttaggattctagggttttgcttggatggtgacgaaaagatgctcatttatgaattcatgcccaaTAAAAGTTTGGACTATTTTCTATTTGATTCTGAAAAATCACATCAGATCAATTGGCTAAGACGATACAAGATAATAGAAGGAATTGCGCGAGGAATACTTTATCTTCACGAAGACTCTCGACTTAGAatcatacatcgtgatcttaaagctagtaatatattattagatgagaatttaaatcctaaaatttcagactttgggatggcaagaatttttggTGTTGATCAAACTCGAGGAATCACAAATAGAGTTGTTGGAACATTTGGTTACATGTCTCCGGAATATGCAATGCATGGAGAGTTTTCTATCAAAACAGATGTGTATAGCTTTGGTGTCCTTGTTCTTGAGATAATAACCGGAAAGAAGATCACATCTTTCCGTGAATCTGGCTATGCTGAGGACCTGTTGAGCTATGCTTGGAAAAAATGGAAAGATGGGGCAGCATTGGAGTTGTTGGACATAACATTAAGAGATTCATACTCAAGAGATGAAGTGAGAAGATGCATCCATGTTGGATTATCATGTGTTCAAGAAGATCCAGTTGAAAGACCATCCATGCAAACAATAGTTCTATTACTAAGTAGCCAATCTGTTACTCTTGAAGCACCCAAACAACCTGCGGGTTATATTAATAGCAAAAGTGATCAACAAAGTTATCCAACTAGAGAGTTTGAGAATTCAGATAAGTCTACAACTAAAACCCAATCTGTTACAGCTTCTGTTGATGAAGAATCAATTACTCACGTGTACCCTCGATAG	2010	0.3398	MIHLKQMQHFKSSTTYVILSFALIITTTQAATDQTFIQSYCPSKNTFSPNTTYQTSLNKLLSLLSSNSTNKNGFYYTTTTNNPENTVYGAFLCRGDLKPNECKDCVSIASKEILQHCPNGKESVVWLAECMIRYSNVSFLNEASEVPVFDLMNTGSVMEQSRFMQLLADTMNAAAAEAANGGSDNKFGTKEANFSSFQTLYTLAQCTPDLSKSGCEKCLTIATTQLPSCCNGKQGGRVLIPSCNIRYEFYPFYHELNAPAPEEPRPNSQGKKSKNSILIIVAIVAPIGLVLLLTLFVYWILSEGKRKNYNSVTEESVQISRVEFLQFDFDTIAAATDNFSNENKLGEGGFGEVYKGMLFNGQEIAVKRLSRSSGQGIEEFKNEVVLVAKLQHRNLVRILGFCLDGDEKMLIYEFMPNKSLDYFLFDSEKSHQINWLRRYKIIEGIARGILYLHEDSRLRIIHRDLKASNILLDENLNPKISDFGMARIFGVDQTRGITNRVVGTFGYMSPEYAMHGEFSIKTDVYSFGVLVLEIITGKKITSFRESGYAEDLLSYAWKKWKDGAALELLDITLRDSYSRDEVRRCIHVGLSCVQEDPVERPSMQTIVLLLSSQSVTLEAPKQPAGYINSKSDQQSYPTREFENSDKSTTKTQSVTASVDEESITHVYPR	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g01343	669	ProSiteProfiles	Gnk2-homologous domain profile.	145	252	IPR002902	-
	Car04g01343	669	SUPERFAMILY	Protein kinase-like (PK-like)	324	626	IPR011009	-
	Car04g01343	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Car04g01343	669	Gene3D	Phosphorylase Kinase; domain 1	301	414	-	-
	Car04g01343	669	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	15	667	-	-
	Car04g01343	669	PANTHER	PROTEIN, PUTATIVE ISOFORM 1-RELATED	15	667	-	-
	Car04g01343	669	ProSiteProfiles	Protein kinase domain profile.	339	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car04g01343	669	CDD	STKc_IRAK	345	607	-	-
	Car04g01343	669	SMART	serkin_6	339	615	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car04g01343	669	ProSiteProfiles	Gnk2-homologous domain profile.	35	139	IPR002902	-
	Car04g01343	669	Pfam	Salt stress response/antifungal	158	249	IPR002902	-
	Car04g01343	669	Pfam	Salt stress response/antifungal	41	136	IPR002902	-
	Car04g01343	669	ProSitePatterns	Protein kinases ATP-binding region signature.	345	367	IPR017441	GO:0005524
	Car04g01343	669	Gene3D	-	32	139	IPR038408	-
	Car04g01343	669	Gene3D	-	146	252	IPR038408	-
	Car04g01343	669	Gene3D	Transferase(Phosphotransferase) domain 1	415	625	-	-
	Car04g01343	669	MobiDBLite	consensus disorder prediction	621	669	-	-
	Car04g01343	669	MobiDBLite	consensus disorder prediction	626	660	-	-
	Car04g01343	669	Pfam	Protein tyrosine and serine/threonine kinase	341	608	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g01343	Car-Chr4	13793776	13797083	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g01343	10	669	Receptor kinase-like Gene Family	AT4G05200	50.000	0.0	660

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Car04g01343		PK_Tyr_Ser-Thr	5.8e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g01343	-		-	cit:102622618	743.036