Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01341 ATGGAGTTTCAGAGGCGCCAAGATCACTGCCTCTCTGAGAGGAAGGGGCAAAAACGGAAGCTAGACGAAGAATTACACGACGAACGACAGATCTCGGCGGCGGCGCCGCCAACCGCCGACGAACGTGCGAAACTCCTCGCCGAAGTTGCCAACCAAGTCACCATCCTCGAGTCGACTTTCACGTGGAACGAAGCCGATCGATCAGCGGCTAAGCGAGCTACTCACGCGCTCGCCGATCTCGCGAAGAATGAGGAAGTGGTGAACGTGATTGTCGAAGGAGGTTCGATTCCGGCTTTAATTAAGCATCTTCAGGCGCCACCTTTGAGCGATTCTGTTCAGAAACCACTGCCATTTGAGCATGAAGTTGAGAAAGGAAGCGCTTTCGCGCTAGGACTTCTTGCCGTCAAGCCAGAACATCAACAGCTAATTGTTGACAATGGTGCCTTAACACATCTCGTGGACCTTTTAAAGAGGCATAAAAATGGCTTAACTTCTCGTGCCATCAATAGTCTCATTCGTAGGGCTGCGGATGCTGTTACTAATCTTGCACATGAGAATAGCAACATCAAAACTCGAGTCAGGATGGAGGGTGGAATTCCACCACTTGTTCATTTGCTAGAGTTTGCCGATGCAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACCCTAGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTCTAATTTTAATGTTGCGGTCTGAAGATTCTGCTATACATTATGAAGCGGTTGGTGTGATTGGAAATTTAGTTCACTCTTCTCCTAATATAAAGAAAGAGGTTCTCCTTGCTGGTGCTCTACAACCAGTTATTGGATTACTTAGCTCCTGTTGCTCTGAAAGTCAGAGGGAAGCGGCATTGTTACTTGGACAATTCGCAGCAACTGATTCAGACTGTAAGGTTCACATTGTACAAAGAGGTGCTGTCCGCCCATTGATAGAGATGCTTCAGTCTCCTGATGTACAACTAAGAGAAATGTCTGCCTTTGCATTAGGAAGATTGGCCCAGGACACACATAATCAGGCTGGTATTGCACACAATGGTGGTTTAGTGCCATTGCTCAAGCTTCTCGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCTGATTTCATTAGGGTAGGTGGAGTTCAGAGACTACAAGAAGGAGAGTTTATTGTTCAAGCAACAAAGGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGTCGTGTGCTGAACCATCTGTTATATCTCATGCGAGTTTCAGAAAGGGGTTTTCAAAGGCGAATTGCTTTGGTTCTTGCACATCTTTGTTCTGCAGATGATCAAAGAAGAATTTTCATTGAACACCATGGTCTTGAGTTGCTTATTGGGCTCCTTGGCTCATCTAGCTCCAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCAAATAAAGTCTCGACTTTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTTTACTTAGGAGAGCAGTATGTAAACAGTGCTACATTGTCCGATGTCACATTTTTGGTTGAAGGCAAACGTTTTTATGCTCATAGAATTTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATCGGGAGAAGGATGCAAGGGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTTCAGATATTGCTCAAGATCTTCTGCGAGCAGCTGATCAATATCTTTTAGAAGGACTAAAGAGACTCTGTGAGTACACGATTGCACAGGATATATTACTAGAGAATGTGTCAAGTATGTATGAGCTTTCAGAAGCCTTCAACGCAATATCATTGAGGCATACATGCATTCTTTTTATCTTGGAGCACTTTGATAAGCTGAGCACAAGGCCAGGACACCCTCTTCTGATTCAGCGTATAATACCAGAGATTCGCAAGTACTTTGTTAAAGCTCTTACCAATGGCAACTCCCATAACAGCTGA 2118 0.4405 MEFQRRQDHCLSERKGQKRKLDEELHDERQISAAAPPTADERAKLLAEVANQVTILESTFTWNEADRSAAKRATHALADLAKNEEVVNVIVEGGSIPALIKHLQAPPLSDSVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALTHLVDLLKRHKNGLTSRAINSLIRRAADAVTNLAHENSNIKTRVRMEGGIPPLVHLLEFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDSAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSERGFQRRIALVLAHLCSADDQRRIFIEHHGLELLIGLLGSSSSKQQLDGAVALCKLANKVSTLSPVDAAPPSPTPQVYLGEQYVNSATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTSDIAQDLLRAADQYLLEGLKRLCEYTIAQDILLENVSSMYELSEAFNAISLRHTCILFILEHFDKLSTRPGHPLLIQRIIPEIRKYFVKALTNGNSHNS 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01341 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Car04g01341 705 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 6 701 IPR044282 -
Car04g01341 705 MobiDBLite consensus disorder prediction 1 30 - -
Car04g01341 705 CDD BTB_POZ_ARIA_plant 527 642 - -
Car04g01341 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Car04g01341 705 SUPERFAMILY POZ domain 532 634 IPR011333 -
Car04g01341 705 SUPERFAMILY ARM repeat 438 610 IPR016024 -
Car04g01341 705 SMART arm_5 270 310 IPR000225 GO:0005515
Car04g01341 705 SMART arm_5 136 184 IPR000225 GO:0005515
Car04g01341 705 SMART arm_5 468 508 IPR000225 GO:0005515
Car04g01341 705 SMART arm_5 312 352 IPR000225 GO:0005515
Car04g01341 705 SMART arm_5 228 268 IPR000225 GO:0005515
Car04g01341 705 SMART arm_5 353 393 IPR000225 GO:0005515
Car04g01341 705 SMART arm_5 83 135 IPR000225 GO:0005515
Car04g01341 705 SMART arm_5 186 226 IPR000225 GO:0005515
Car04g01341 705 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Car04g01341 705 ProSiteProfiles BTB domain profile. 540 607 IPR000210 GO:0005515
Car04g01341 705 SMART BTB_4 540 637 IPR000210 GO:0005515
Car04g01341 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Car04g01341 705 Gene3D Potassium Channel Kv1.1; Chain A 521 669 IPR011333 -
Car04g01341 705 Gene3D - 168 275 IPR011989 -
Car04g01341 705 Gene3D - 428 515 IPR011989 -
Car04g01341 705 Gene3D - 276 427 IPR011989 -
Car04g01341 705 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 6 701 - -
Car04g01341 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Car04g01341 705 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Car04g01341 705 Pfam Armadillo/beta-catenin-like repeat 193 225 IPR000225 GO:0005515
Car04g01341 705 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Car04g01341 705 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Car04g01341 705 SUPERFAMILY ARM repeat 64 412 IPR016024 -
Car04g01341 705 MobiDBLite consensus disorder prediction 1 39 - -
Car04g01341 705 Gene3D - 38 167 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01341 Car-Chr4 13772957 13783537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01341 199 507 U-box Gene Family AT3G46510 26.774 7.65e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Car04g01341 BTB 2.6e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01341 - - gmx:100784348 1231.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01341 04 13772957 13783537 Car04g01341 04 13772957 13783537 ECH
Car08g00059 08 529342 536023 Car04g01341 04 13772957 13783537 PCT