Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01322 ATGGAACCGGGCACGAGAATAGCTAGCCCTTCTGGGGTTGTTGTTAAGAATAGGAGTACTTCGGGGTGTTTGATTGTTAGAAAGAAAGGGGATAGTTTGGGTGGTGGAGTTGGTGGTTCTTCAAACTCCCGGAAGCAGTATGAATCTAAGAAAGTGAGGAAAAAGCCCAAGGCCGAATCAAGTGATTCGGGATCAAGCGGCGAGTTATTAGTACCACCTGCTAGGAGGCTTGGCCCTGAGACCATTCGAGTATGTAATAGTTTGAGTGCTATTGAGCGAGGTGGTATGGTTGGTAGCGGGGAAATCAGTAGGAAGAGGGAGAGAATGGAGCCAATTAGGCGTAATGGGGATGGCATGGTCGAGGGAAATGGCTTGGAGAGGAGGGAAAAGAAAGTAAAGATGGATGTGTTTGATTTTGATGAATATGATGGAGCTGGGGCTGAAATGATGAGAAGGAGGCATTTTGATCATGATGGGGTTAGTTTAGGAGGAGGAGGAAGGTTTATGGGAACAATGCATGCTGGTAGAGGTAGCATTGACAGGGAATTTGAAACTGGTTCAAGCAGACACAGTGTGGATAAGAGAAAAAAATCCTATTATGATAGGCCAACTGGCTCGTATCTCGGAGATAACGTCGAACACAGTAGGGTCAAGATGAAAAGGGATGGAACTCAGCATCCTCTGCCCTTGTTGAAGGAGAAGTTTAAGTCTGATGAGTCCATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTGATGGTTAATAAGAAGAAGGCGGGTGGGCCTGTAGAGCCCTATGATCATCGTAAACCAGTTGAAAGCAAACAAATATTAAGGGTGGAGGGCACTTCTAAGAGGAATGTTCTGATCCATCCTTCATCACAACTAGAAACGAAACCTGCCGAGAAACAGGGTTTACTTATTAGGCCAGAGAAGAAACAAATAACAACAAGAAAATCACTGTCAAGTAAGGAGGATAGTAAGGGTGATGAGCAGGATTCAGATAACAGTGACTCATCAATGAATCTGGAAGTAAAAAATATTGAAGCTCACACATCTTCGAAAAAGGCAACCTCTGAAAATGAACAGACTCCTGTGCATGACAAGCTCCGAACCACAAAATCAAGTGAAGGAAAAATCAGGCGAGGTAGTGGCACGGAAAAGCAGAAACTAAGAGAACGAATACGGGAGATGCTTCTGAATAAAGGTTGGACCATAGACTATCGCCCGCGGAGGAATAGAGACTACTTAGATGCGGTTTACATTAATCCTGCGGGTACAGCTTACTGGTCCATCATCAAGGCCTATGATGCACTTCAAAAGCAATTGATTGATGATGATCAAGCTGCCAAGGCCAAAGGGGAGAGTTCTTCTTTTGCTCCTATAGCTGATGATGTGCTCAGTCAATTGACAAGGAAAACTCGGAAGAAGATGGAGAAAGATTTGAAGATGAAGAGAAAGAAGCAAAGAGTTGATGACATTGATAGTGGAAAAGAACTGCGGATGAAAAAATTTTCTGGCAAAAAGCATCATATGAATGTCATGGATAGTGATAGCAATGAAGAGAAGTTAAGTTCCTTTATCAAGCAAGGAAGTAAATCAGTGAAAACTAAATTGACTGAAAATGCTATTACAGGTGGTAGCTCTAAGAATGCTGCCCATCACTCAAATGATGGAACTGAAAAATCATTCTTTGAAAACGACCCTCATCTCCTACATGGAAGAAAAAGTAGAAACCATGGAAGGTGCACTTTATTAGTTCGTAGTTCGAACAAAGGATTGAATTCAGAATCTGACGACTTTGTTCCATATACTGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCAGGGGCAGTACAGGTAAGTCAAAAGGTTCAGTACCGTCGGAAGAAGCGAGTAATGCTTGAGGGATGGATCACAAGAGAAGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACGGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAGCCATATCAAAACATATATTTGGATTCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCGTGGGATAGACAAGAGAATTCTGGGAAAATTAGTTTCCATTCAGTAGATATTGATGGTAATGATCCAAATGATGATACCTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACTTTTCATCAGAGTTGCTTGGATATACAGATGCTCCCCCCTGGGGACTGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGACTAGCCAGTGGAACTATTGCCAGAGAAGATGGTGCAACTGTATATGCCTTACGTACTTGTGACTTATGCGAGAAAAAATATCATGATTGTTGTGCTAAGGATACGGTTGCCGTTCTTGCCAACTCCAATATGTCGGGGCATTCCTTTTGTGAAAAAAGCTGCAAAGAGCTTTTCGAGCACTTGAAGAAGTACCTTGGCACCAAGCATGAAATTGATGCAGGCTTTACATGGTGTCTTGTTCGTAGAACAGATGACGATTCAGAAGCAGCTAGTAGGGGAGTCACCCAGAGGGTGGAATGCAACTCCAAGCTGGCTGTTGCACTGACTGTGATGGACGAATGCTTTTTACCTGTTGTTGATAGGAGGAGTGGGATCAATTTAATTCACAATGTTCTATATAATAGCGGGTCAAACTTCAGTCGGTTGAATTATACTGGCTTTTATACTGCTATTTTGGAGCGGGGGGATGAAATAATTTCTGCAGCATCTATCAGGTTCCATGGGACTAAATTAGCAGAGATGCCATTCATTGGAACTCGCCATATACATAGACATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATTGAACTCGCGCTTTGCTCTTTGAAGGTTGAGAAACTGGTTATTCCTGCAATTTCTGAACTTGTTCATACGTGGACAACAGTTTTTGGCTTCACACATCTTGAGGAATCACTCAGGCAAGAAATGAGGTCATTGAATATGTTGGTGTTCCCTGGTATTGATATGTTACAGAAGCTTCTAGTGGAGCAAGGAGAACTCGAGGGTGCCGAGCAATTTGAGAATGGAGATGTGGTTTCTATCAAGCCTGCTGTGGTCAATAGATTAGATATGGATCCATCAGCTTTGCAAGATCCTCGTGGAAGTGAGGATGTTAGTTCCAATCCCAATAAGACTAGCAATGAATGTAGTGATGCTTCTCACGAACTAAGCAACCAAGGTTTGATTGACAGGACTGTGTGCTCCAAATCTCACTCTGAGGAAAGATTATCTGATTCTGTTTCAGAAAATTGTGCTTCTCCTTCTAATTCTAATCATGCAGTACTAGTAGAAAAGAAAAATGAAATATCAATGTCTTCTCCTGTTAATGATGAATTGCATCCATCACCCAAACGTCAAATCATTTCACCAAATGGCATTGCTACTACTGGTCTTCCATCAGATCCCTCAGAGTGCCATGAAATTCCAGCTTGGGGTCAAGAAACTGCATGTTCTGATCTAGGTACTGCAAAAGACCTGGTTGAACCTGTTCCTGACCCAAAACCCCATGCTTTCACTGATATGAACTGTGATTCACCAGGGCTTGGCCGAAACACTGTGTTGGATTCTCAAGTGGCGGATAATGCTTTGTCTTTCAAAGAGTTTGATATAAATGATGCCCATGTTGAGGTTCTTGAAGCTGGTCCTTTAGTGAATTTGTCTCAAGGGAACAATACCAAAGAGGGTAATGAAAACGTAGATGTCTCTTGTTCTGTTCTTAATCATGCTGGTGAGAGTTCCTTGCAGGTAAAATCTGATTTGAATGGTGAAGTTGCATATGAGGGGGAAAATAATTTACATTTGGACAGAGAAGTTGCTTCAAATGAAATGCATTCTGATGAAACTGGCCTAAATCCTTCTGGTGACAGTACAGAAACTGATCCAGCATAA 3954 0.4246 MEPGTRIASPSGVVVKNRSTSGCLIVRKKGDSLGGGVGGSSNSRKQYESKKVRKKPKAESSDSGSSGELLVPPARRLGPETIRVCNSLSAIERGGMVGSGEISRKRERMEPIRRNGDGMVEGNGLERREKKVKMDVFDFDEYDGAGAEMMRRRHFDHDGVSLGGGGRFMGTMHAGRGSIDREFETGSSRHSVDKRKKSYYDRPTGSYLGDNVEHSRVKMKRDGTQHPLPLLKEKFKSDESIRVQGKNGVLKVMVNKKKAGGPVEPYDHRKPVESKQILRVEGTSKRNVLIHPSSQLETKPAEKQGLLIRPEKKQITTRKSLSSKEDSKGDEQDSDNSDSSMNLEVKNIEAHTSSKKATSENEQTPVHDKLRTTKSSEGKIRRGSGTEKQKLRERIREMLLNKGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLIDDDQAAKAKGESSSFAPIADDVLSQLTRKTRKKMEKDLKMKRKKQRVDDIDSGKELRMKKFSGKKHHMNVMDSDSNEEKLSSFIKQGSKSVKTKLTENAITGGSSKNAAHHSNDGTEKSFFENDPHLLHGRKSRNHGRCTLLVRSSNKGLNSESDDFVPYTGKRTVLSWLVDSGAVQVSQKVQYRRKKRVMLEGWITREGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLDSGVSLLQCQIDAWDRQENSGKISFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGDWHCPNCTCKFCGLASGTIAREDGATVYALRTCDLCEKKYHDCCAKDTVAVLANSNMSGHSFCEKSCKELFEHLKKYLGTKHEIDAGFTWCLVRRTDDDSEAASRGVTQRVECNSKLAVALTVMDECFLPVVDRRSGINLIHNVLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIHRHQGMCRRLFSAIELALCSLKVEKLVIPAISELVHTWTTVFGFTHLEESLRQEMRSLNMLVFPGIDMLQKLLVEQGELEGAEQFENGDVVSIKPAVVNRLDMDPSALQDPRGSEDVSSNPNKTSNECSDASHELSNQGLIDRTVCSKSHSEERLSDSVSENCASPSNSNHAVLVEKKNEISMSSPVNDELHPSPKRQIISPNGIATTGLPSDPSECHEIPAWGQETACSDLGTAKDLVEPVPDPKPHAFTDMNCDSPGLGRNTVLDSQVADNALSFKEFDINDAHVEVLEAGPLVNLSQGNNTKEGNENVDVSCSVLNHAGESSLQVKSDLNGEVAYEGENNLHLDREVASNEMHSDETGLNPSGDSTETDPA 1317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01322 1317 MobiDBLite consensus disorder prediction 1291 1317 - -
Car04g01322 1317 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1128 - -
Car04g01322 1317 Pfam PHD-finger 716 758 IPR019787 -
Car04g01322 1317 ProSiteProfiles Zinc finger PHD-type profile. 713 758 IPR019787 -
Car04g01322 1317 MobiDBLite consensus disorder prediction 1299 1317 - -
Car04g01322 1317 ProSitePatterns Zinc finger PHD-type signature. 716 755 IPR019786 -
Car04g01322 1317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 813 IPR013083 -
Car04g01322 1317 MobiDBLite consensus disorder prediction 183 207 - -
Car04g01322 1317 Pfam Tify domain binding domain 638 688 IPR032308 -
Car04g01322 1317 MobiDBLite consensus disorder prediction 18 75 - -
Car04g01322 1317 MobiDBLite consensus disorder prediction 283 390 - -
Car04g01322 1317 PANTHER PHD FINGER FAMILY PROTEIN 1 1128 - -
Car04g01322 1317 MobiDBLite consensus disorder prediction 1047 1078 - -
Car04g01322 1317 MobiDBLite consensus disorder prediction 543 566 - -
Car04g01322 1317 CDD PHD2_CHD_II 716 755 - -
Car04g01322 1317 MobiDBLite consensus disorder prediction 183 201 - -
Car04g01322 1317 MobiDBLite consensus disorder prediction 349 390 - -
Car04g01322 1317 SUPERFAMILY FYVE/PHD zinc finger 705 761 IPR011011 -
Car04g01322 1317 SMART PHD_3 715 756 IPR001965 -
Car04g01322 1317 MobiDBLite consensus disorder prediction 304 335 - -
Car04g01322 1317 MobiDBLite consensus disorder prediction 1055 1078 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01322 Car-Chr4 13560176 13567572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01322 4 1032 PHD Transcription Factor Family AT4G14920 49.187 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car04g01322 TDBD 2.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01322 - - mtr:MTR_1g103830 2031.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01322 04 13560176 13567572 Car04g01322 04 13560176 13567572 ECH