LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g01295	ATGCAATCGGAAGCTGGGGGTCTTACGACCCCTAAGATGGGATTGGAAGGAGCTTTGAATTCAAAGATGAAGGGTACTGGAAATCTAAGCAGCAAAGATATGATTTTTAGAGCTGATAAGATTGATCTGAAGAGCTTGGATACTGAGCTAGAAAGGCACTTGAGCAGGGTTTTTTCTAGAAGCGTTGAGGCAAAGAGGCCTAAAGAGGAGTGGGAGATTGATTTGGCCAAATTGGATTTACGATATGTTGTTGCTAATGGGGCTTATGGCACTGTCTACAGGGGAACTTATGACGACCAAGATGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGAGTTGCCACTGCTGCTGAAACTGCTGCTTTACGAGCATCATTTCGGCAGGAGGTTACTGTGTGGCAAAAACTTGATCATTCAAATGTCACAAAATTTGTTGGAGCTTCAATGGGCACTTCAAATCTTAAAATTCCTTCAGATGCTGGTGGTCAAGATTCACTTCCTTCCAAGGCATGTTGCGTTATTGTTGAGTTTGTTCATGGTGGGACATTGAAACAGTTCTTGTTGAAAAATAGGCGAAAGAAACTTACATACAAGGTTGTGATTCAGTTGGCTTTGGACCTCGCTAGAGGTCTTAGTTATCTACACTCGAAGAAAATTGTTCACCGCGATGTAAAAACTGATAATATGCTTTTAGATGATAATCAAAATTTGAAAATAGCTGATTTTGGAGTTGCTCGGGTTGAAGCTCAAAATCCAAGTGAAATGACCGGTGAAACTGGAACAGTTGGATATATGGCACCAGAGGTTATAAATGGCAAACCTTACAACAGAAGTTGTGATGTCTACAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGACATGCCTTACCAAAATCTAAGCTTTGCTGATGCGTCAGCTGCAGTTGCTCATCGGAATCTACGACCAGAGATTCCTAGATGTTGTCCAAGTGCCTTAGCAAATATAATGAAAAGATGTTGGGATAAACATCCCGAAAAGCGTCCAGAAATGCAAGAGGTGGTGGGAATGTTAGAAGCACTTGATACAAGCAAAGGAGGTGGCATGATACCTGAAGATCAGACTCCATTTTGTTTTTGTTTTATAGCTGCTCGGGGTCCATAA	1149	0.4186	MQSEAGGLTTPKMGLEGALNSKMKGTGNLSSKDMIFRADKIDLKSLDTELERHLSRVFSRSVEAKRPKEEWEIDLAKLDLRYVVANGAYGTVYRGTYDDQDVAVKVLDWGEDGVATAAETAALRASFRQEVTVWQKLDHSNVTKFVGASMGTSNLKIPSDAGGQDSLPSKACCVIVEFVHGGTLKQFLLKNRRKKLTYKVVIQLALDLARGLSYLHSKKIVHRDVKTDNMLLDDNQNLKIADFGVARVEAQNPSEMTGETGTVGYMAPEVINGKPYNRSCDVYSFGICLWEIYCCDMPYQNLSFADASAAVAHRNLRPEIPRCCPSALANIMKRCWDKHPEKRPEMQEVVGMLEALDTSKGGGMIPEDQTPFCFCFIAARGP	382

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Car04g01295	382	Gene3D	Phosphorylase Kinase; domain 1	67	160	-	-
Car04g01295	382	PANTHER	KINASE ATMRK1, PUTATIVE-RELATED	15	375	-	-
Car04g01295	382	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	15	375	-	-
Car04g01295	382	CDD	STKc_MAP3K-like	87	353	-	-
Car04g01295	382	SUPERFAMILY	Protein kinase-like (PK-like)	61	353	IPR011009	-
Car04g01295	382	ProSiteProfiles	Protein kinase domain profile.	78	356	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Car04g01295	382	SMART	serkin_6	78	356	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Car04g01295	382	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	220	232	IPR008271	GO:0004672\|GO:0006468
Car04g01295	382	MobiDBLite	consensus disorder prediction	1	21	-	-
Car04g01295	382	PRINTS	Tyrosine kinase catalytic domain signature	176	189	IPR001245	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g01295	Car-Chr4	13300848	13304286	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g01295	27	382	MAP Kinase Kinase Kinase	AT3G22750	76.751	0.0	600

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Car04g01295		PK_Tyr_Ser-Thr	7.4e-62	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g01295	-		-	gmx:100803917	644.039

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car04g01295	04	13300848	13304286	Car04g01295	04	13300848	13304286	ECH
	Car04g01295	04	13300848	13304286	Car08g00086	08	696253	700322	PCT

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