Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01292 ATGAAAGGCCCTTATACTCTTACTCTACAATTTTGCATTCTCTTCATTTCCATTCTCATTTCTATCAATCCCTCACACCAATCTCTACCACCATTAAATCCAAGGCTCTCTAAAGCTTACACAGCACTCCAAGCATGGAAACAAACATTCACCTCTGACCCAAAAAACTTCACCTCAAATTGGTATGGCCCAAATGTTTGCAACTACACAGGAATCTACTGTGCACCAGCACCAGATGATTCTTACATCTATACAGTTGCTGGAATAGACATTAACCATGCAAACATAGCAGGTTCATTACCAGAACAACTCGGTCTCTTAACAGACTTGGCCCTTTTCCACATAAACTCCAATCGATTCTGCGGTTCGCTCCCATATAATTTCACCTACCTTCAACTTCTCCATGAATTAGATATCAGTAACAACAAATTCTCAGGCAAATTTCCTGAAGTTGTTCTCTGCATTTCTTCATTAAAATACTTAGACATAAGATTCAATGATTTTCAAGGTGATATTCCTGACCGCCTTTTTGATCTCAAACTCGATGCACTTTTTATTAACAACAACAAATTCCAATTCTCATTGCCTGAAAATTTTGGAAACATTTCTGCTTCTGTTGTAGTGTTTGCAAACAATGAAATCAAAGGTTGTGTTCCATCAAGTGTGGTTAAAATGAAAGATACAATTAATGAGATTATTATTAGGAATAGTGGATTAAAGGGTTGTTTGCCAAATGAAATAGGGAAATTGGATAAAGTTACTGTTTTTGATGTTAGTTTTAATGAGTTGGTTGGTGAATTGCCTGAAAGTATTGGTGATATGAAGAGTTTGGAGCAATTAAATGTGGCAAATAATAGATTTTCTGGTGTGATTCCAGAGAGTATATGTAGGTTGCCAAGGTTGGAGAATTTTACGTATTCGTATAATTACTTTTGTGAAGAATCGGAAACGTGTGTTAAGTTGAAAGTTAAGGATGATAGGAAAAATTGTATTCCTTATAGGCCATTGCAAAGGTCCATTTATGAATGTGAAACTTTTTATAAACATCCTCTTCATTGTACTGGTTTTGGTTGTTCCTTTACAACTGcgccgccgcctccaccaccaccgcctccaccaccgcctccgcctccaccaccaccgccgcctccgcctccacccccaccaccgcctccgccaccgccgcctccgGCAGTTTATTACCATTATCTCTGA 1215 0.3251 MKGPYTLTLQFCILFISILISINPSHQSLPPLNPRLSKAYTALQAWKQTFTSDPKNFTSNWYGPNVCNYTGIYCAPAPDDSYIYTVAGIDINHANIAGSLPEQLGLLTDLALFHINSNRFCGSLPYNFTYLQLLHELDISNNKFSGKFPEVVLCISSLKYLDIRFNDFQGDIPDRLFDLKLDALFINNNKFQFSLPENFGNISASVVVFANNEIKGCVPSSVVKMKDTINEIIIRNSGLKGCLPNEIGKLDKVTVFDVSFNELVGELPESIGDMKSLEQLNVANNRFSGVIPESICRLPRLENFTYSYNYFCEESETCVKLKVKDDRKNCIPYRPLQRSIYECETFYKHPLHCTGFGCSFTTAPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAVYYHYL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01292 404 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 371 - -
Car04g01292 404 MobiDBLite consensus disorder prediction 364 391 - -
Car04g01292 404 SUPERFAMILY L domain-like 39 317 - -
Car04g01292 404 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 20 371 - -
Car04g01292 404 Pfam Leucine rich repeat N-terminal domain 40 74 IPR013210 -
Car04g01292 404 Gene3D Ribonuclease Inhibitor 38 331 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01292 Car-Chr4 13259609 13261295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01292 22 358 Leucine-rich Repeat extension Gene Families AT3G22800 67.449 1.37e-163 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01292 - - gmx:100818195 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01292 04 13259609 13261295 Car04g01292 04 13259609 13261295 ECH