Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01289 ATGGCTGGTAGGCTACCTGGTGTTGGATTGCCACCAAGGAAAAAATCACAACTTAACATCAGACATGAACACTGTGTTACCTATAGAGACTCCAATCTAAGTGAATCATTGGATGCACCATGGACTTCAATCACTACTACCTTAGATGAAAATGCTTTCAAGGCCAAACAACGCCTTCGCAAGAAGCTTGGTTACTTCTTATCCTCTTCCGGGTCAAGTGAACAAAATCCCAAAAAAGAAGGAAAAGAAACTAAAAGCACGTTTGAGAAGAAGGATGTTGGATTAGGTAGGAAATTACTTGAAAGTACATGGTTATTGCGTGGAAACAGGTTGAAGAAAGAGAAAAAAGTATGCGCTGTGTGTCTAGAAGATTTTCAGCAACATAAGGAGGTTATGAACCTTTCTTGCTCCCATAAGTATCATTCTGCATGTCTTCTCCCTTGGCTTCGAGCAAATCCTCATTGTCCTTGTTGTAGAACCATGGTTGAGCCCTCATAG 498 0.4096 MAGRLPGVGLPPRKKSQLNIRHEHCVTYRDSNLSESLDAPWTSITTTLDENAFKAKQRLRKKLGYFLSSSGSSEQNPKKEGKETKSTFEKKDVGLGRKLLESTWLLRGNRLKKEKKVCAVCLEDFQQHKEVMNLSCSHKYHSACLLPWLRANPHCPCCRTMVEPS 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01289 165 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 36 160 - -
Car04g01289 165 SUPERFAMILY RING/U-box 117 163 - -
Car04g01289 165 Pfam Ring finger domain 117 159 IPR001841 -
Car04g01289 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 164 IPR013083 -
Car04g01289 165 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 36 160 - -
Car04g01289 165 CDD RING-H2_PA-TM-RING 117 159 - -
Car04g01289 165 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
Car04g01289 165 MobiDBLite consensus disorder prediction 68 87 - -
Car04g01289 165 SMART ring_2 118 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01289 Car-Chr4 13235508 13237825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01289 111 162 C3H Transcription Factor Family AT1G49850 46.154 3.58e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01289 - - gmx:100527548 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01289 04 13235508 13237825 Car04g01289 04 13235508 13237825 ECH