Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01265 ATGACGACGAACAATGGGAACGAAAACGTGAATAGTTTAGAGTTTCAGCTAGAGTGTAaagaaaagaaaaagaagaaaaaatttaaatctgaagaagacgaagaaCCTGTAGTAATGGAAAAGAAGGTGGATGATCCCAATGCGGTTTCTAAATTTAGGATATCTGAACCGTTGAGGGAAAAATTGAAGGAAAAAGGAATCGAGTCACTGTTTCCTATTCAGGCTATGACTTTTGATTTAGTTCTTAATGGTTCTGATTTGGTTGGTCGGGCTCGCACCGGTCAGGGTAAAACTCTTGCCTTTGTATTGCCAATATTAGAATCTGTAGCGAATGGCCCGGCAAAAGCATCAAGGAAGATTGGATATGGAAGGCCTCCAAGTGTTCTTGTGCTTTTACCTACTAGGGAATTGGCCAGTCAGGTGAATGCTGATTTTGAAGTTTATGGTGGCGCAATGGGATTGACTTCTTGTTGTTTAATTGGAGGAAGTTCATATCAAGTTCAAGAGCTTAAGAGAGGTGTGGATATTGTTATTGGCACACCGGGCCGCATAAAGGATAATATAATGCGGGGAAATATTGACCTGAGCCAATTAAAGTTTCGAGTCCTCGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTTCAAGATGTTGAACTGATTCTTGGTAAGGTAAAAAATGTTGAAAATGTTCAGACACTACTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGAATATTGCTGTAAGATTTCTTAAGCCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTACCAGTGTTAGGCATATTATTCTTCCTTGTACCGAATCTGCTAGGTCCCAGCTTATTCCAGACATTATTCGATGTTACAGCAGTGGAGGTCGAACAATTATATTCACCGAGACACGGGAATCGGCATCGCAACTTTCAGGGTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAAGCACAACGCGAGGTTACTTTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCCACAAACGTGGCAGCACGGGGTCTGGATATTAATGATGTTCAGTTAATTATTCAGTGTGAACCTCCAAGGGACGTAGAAGCCTATATCCATCGTTCCGGGCGCACAGGAAGAGCAGGTAACACTGGAGTTTCTGTTATGCTTTATGATCCAAGGAGGTCAAATATATTGAAAATAGAGAGAGAGTCAGGTGTAAAATTTGAACATGCATCTGCCCCTCAGCCTAATGATATCGCAAAAGCTGTTGGTGGGGAAGCTGCAGAATTGATTACTCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTACTGCTGAGGAGCTTTTGAAAAACTCTGGTTTATCAGTAGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACTGAGATCAAGAAAAGATCTCATCTCACTTCTATGGAGAACTATGTTACATTACTTCTTGAGACCGGGAGACCTATCTTTACCCAAACGTAA 1533 0.4077 MTTNNGNENVNSLEFQLECKEKKKKKKFKSEEDEEPVVMEKKVDDPNAVSKFRISEPLREKLKEKGIESLFPIQAMTFDLVLNGSDLVGRARTGQGKTLAFVLPILESVANGPAKASRKIGYGRPPSVLVLLPTRELASQVNADFEVYGGAMGLTSCCLIGGSSYQVQELKRGVDIVIGTPGRIKDNIMRGNIDLSQLKFRVLDEADEMLRMGFVQDVELILGKVKNVENVQTLLFSATLPDWVKNIAVRFLKPDKKTADLVGNTKMKASTSVRHIILPCTESARSQLIPDIIRCYSSGGRTIIFTETRESASQLSGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVSVMLYDPRRSNILKIERESGVKFEHASAPQPNDIAKAVGGEAAELITQVSDSVIPAFKSTAEELLKNSGLSVVELLAKALAKAVGYTEIKKRSHLTSMENYVTLLLETGRPIFTQT 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01265 510 Gene3D - 11 258 IPR027417 -
Car04g01265 510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 287 429 IPR001650 -
Car04g01265 510 Pfam DEAD/DEAH box helicase 71 246 IPR011545 GO:0003676|GO:0005524
Car04g01265 510 CDD SF2_C_DEAD 273 399 - -
Car04g01265 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 405 IPR027417 -
Car04g01265 510 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Car04g01265 510 Pfam Helicase conserved C-terminal domain 292 390 IPR001650 -
Car04g01265 510 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 5 507 - -
Car04g01265 510 Gene3D - 272 502 IPR027417 -
Car04g01265 510 SMART helicmild6 309 390 IPR001650 -
Car04g01265 510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 78 258 IPR014001 -
Car04g01265 510 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 507 - -
Car04g01265 510 CDD DEADc 58 253 - -
Car04g01265 510 MobiDBLite consensus disorder prediction 22 41 - -
Car04g01265 510 SMART ultradead3 66 276 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01265 Car-Chr4 12945537 12950192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01265 33 432 Eukaryotic Initiation Factors Gene Family AT3G19760 28.883 1.36e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01265 K16911 - gmx:100805921 805.053