Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01258 ATGTTTCCTTTACAACCAAGCAATGAACTGTCGATCCCGTTATCTAATACTATCCACCACCAACAAAATCACAAAATCTCCCAAGATCTCATTCCTCATGATTATGATTCTCTTCTTCTTGATTTTTCTCATAAAAAGTTATCTACTACAACCCTTCCACCAAGGAAATTATCTCATACAAATAATCTCATTAATTCTAACAAAGAGAAGATGGTTCATAGACAAATTGAGAAACAAAGGAGACAAGAAATGGCCACTCTTCATGCTTCTCTTAGATCCCTTCTCCCTCTTCAATTCATCAAGGGAAAACGTTCTTTATCTGATCAAATGAATGAAGCTGTGAATTACATAAATCACTTAAAGAAGAATATAAAAGAACTTGGTGATAAAAGGGATGAAATGAAAAAGATCTCTAATATTCCAAATTTCAAAAGAAGCTATGCATCTTGTAATTTCACTATACACAAGAATAATGGAAGTGTTGGAATTGAAATTACTAGTAGTGGATTTAGGGAAGAAGGGGTCCCACTTTATAAATTGATGGAACAATTTCTGAAAGAGGGATTTGAAGTTGTTAGTTGTTTTTCAATTCAAGTCAATGGAAGATTACTCCACAGTTTGCAGTGTGAGGCTAACAATTCTGACAGTGTAGATCTATCTGAGCTAAGAAGGAAATTTTCAAATATGAATCCATCATTTAGTTGTTCTGATTAA 714 0.3319 MFPLQPSNELSIPLSNTIHHQQNHKISQDLIPHDYDSLLLDFSHKKLSTTTLPPRKLSHTNNLINSNKEKMVHRQIEKQRRQEMATLHASLRSLLPLQFIKGKRSLSDQMNEAVNYINHLKKNIKELGDKRDEMKKISNIPNFKRSYASCNFTIHKNNGSVGIEITSSGFREEGVPLYKLMEQFLKEGFEVVSCFSIQVNGRLLHSLQCEANNSDSVDLSELRRKFSNMNPSFSCSD 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01258 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 120 IPR011598 GO:0046983
Car04g01258 237 CDD bHLH_AtORG2_like 69 142 - -
Car04g01258 237 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 235 IPR015660 GO:0003700|GO:0006357
Car04g01258 237 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 235 - -
Car04g01258 237 Coils Coil 110 137 - -
Car04g01258 237 Pfam Helix-loop-helix DNA-binding domain 70 121 IPR011598 GO:0046983
Car04g01258 237 Gene3D - 59 145 IPR036638 GO:0046983
Car04g01258 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 136 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01258 Car-Chr4 12880315 12881537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01258 65 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.045 4.79e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g01258 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01258 - - gmx:100780888 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01382 08 22070374 22072776 Car04g01258 04 12880315 12881537 PCT