Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01257 ATGGCCAAAGAGAATCAGCATATAATATTGGCTCCTTCAGGCAATGATGAGAAAAAGATCATTCGTAGGGAAGTTGAAAAACAAAGGAGGATGGAAATGTCTATTTTATGTTCATCACTTCGTTCTTCACTCCCTTCTCACCTCATCAAGGGAAAGCGTTCAGTATCAGATCACATAAATGAGGCTGCAAATTATATCGAAGATTTGAAGAAGAAAATTAATAGACTGGAAATAAAGAGAGACAAGCTGAAAATGAAATCAAGTATGGTTGAAAGTGGAAATGAATTATCAGGAGATATTCGTAATTCAAGTGTAGTGAAGTGTGTGAAAATGAATGTGATTCGAGATGGGGTGGAAATTGTTATATGTAGTGGATTCCATGATTGTAGTAGTTCATCCCCTTTATCAGATTTAATGGAAATAATAGTTGAAGAAGGATGTGATGTTGTTAATTGTGTTACCAATCAAGTAAATGGGAAGACATTTCATACTATTAAGTCTGAGGTGGAGGACATGACACGTCTTGATCTTGCTCGGCTACAAAACAAACTGGATTATGCAATCTTATTGTAA 573 0.3543 MAKENQHIILAPSGNDEKKIIRREVEKQRRMEMSILCSSLRSSLPSHLIKGKRSVSDHINEAANYIEDLKKKINRLEIKRDKLKMKSSMVESGNELSGDIRNSSVVKCVKMNVIRDGVEIVICSGFHDCSSSSPLSDLMEIIVEEGCDVVNCVTNQVNGKTFHTIKSEVEDMTRLDLARLQNKLDYAILL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01257 190 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 189 IPR015660 GO:0003700|GO:0006357
Car04g01257 190 CDD bHLH_AtORG2_like 18 90 - -
Car04g01257 190 Coils Coil 59 86 - -
Car04g01257 190 Pfam Helix-loop-helix DNA-binding domain 22 69 IPR011598 GO:0046983
Car04g01257 190 Gene3D - 12 96 IPR036638 GO:0046983
Car04g01257 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 17 69 IPR011598 GO:0046983
Car04g01257 190 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 189 - -
Car04g01257 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 90 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01257 Car-Chr4 12876226 12877358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01257 15 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 38.983 4.04e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g01257 HLH 7.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01257 - - ccaj:109790384 238.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01381 08 22057627 22060071 Car04g01257 04 12876226 12877358 PCT