Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01250 atgggaagagggaaggtagttctggagagaatacagaacaaaataaatcgacaagtaacattctcaaaacgaaggagtggtttgttgaagaaagctttcgaactttctgttctatgcgatgctgaagttgctcttatcatcttctctagccttggcAAGCTTTTTCAATACAGTACCACTGACTTGAACAAAATCATTGAAAAGTATCGTCAATGTTGTTTCGACAATATGTCTGAGAATGGCGACTTAGGAGAACATCAGTCACAGAGCTTATACCAGGAACTTTTGATGCTAAGAGTCAAGCATGAATCTCTTGCACAGACACAAAGGAACTTTTTGGGAGAAGAACTCCATGCCCTTAGCATGAAAGATTTGCAGAGTCTAGAGAAACAACTCGAAAGAACGCTTGCACAAGCTCGAAAGCAACAAGTGCAAAAGTTGATGGCACGAGTAGATGAGTTACGCAATGAGGTGCACAAGGGGGAGGAGGTTACCAAACAATTAAAATCCAAGGAAATAGGTATAAGCACCAAGTTTTGTGAAGATTCTACTAATTCCAACATCTCCATTAACAACCATATCATTACAAGTTTGCATGATGCACAAGCAGATCCGTTTGAACATGGCACAACAGGCCGGTTTGGACACCAAGAAGCTGCAGCTTCAGAAGAACAAGCAACAGATAGAAGGATGAACAGAGGCCAAAGCAGTCGCAACAAGAACAatgaatatgaatggatgaattga 747 0.3159 MGRGKVVLERIQNKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSLGKLFQYSTTDLNKIIEKYRQCCFDNMSENGDLGEHQSQSLYQELLMLRVKHESLAQTQRNFLGEELHALSMKDLQSLEKQLERTLAQARKQQVQKLMARVDELRNEVHKGEEVTKQLKSKEIGISTKFCEDSTNSNISINNHIITSLHDAQADPFEHGTTGRFGHQEAAASEEQATDRRMNRGQSSRNKNNEYEWMN 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01250 248 MobiDBLite consensus disorder prediction 208 248 - -
Car04g01250 248 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g01250 248 MobiDBLite consensus disorder prediction 222 236 - -
Car04g01250 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car04g01250 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car04g01250 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car04g01250 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car04g01250 248 ProSiteProfiles K-box domain profile. 88 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car04g01250 248 Coils Coil 122 171 - -
Car04g01250 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car04g01250 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car04g01250 248 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Car04g01250 248 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Car04g01250 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car04g01250 248 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 188 - -
Car04g01250 248 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Car04g01250 248 PANTHER MADS BOX PROTEIN 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01250 Car-Chr4 12801344 12804683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01250 1 171 MADS-box Gene Family AT2G45650 51.462 5.42e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car04g01250 K-box 1.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01250 K09264 - gmx:100802197 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01250 04 12801344 12804683 Car08g01374 08 21748207 21757159 PCT