Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01238 ATGGCTGTTGTTGCCGAGAGCGACAGCAGCAGCAAACGATCAACTTCATTCAATTGTTACAAAGTGGCAAGCTTGGTTGAAACCATATTGGATGCGAAGCAAACTTCTAATTTGAAAGATCGATACATTCTTGGGGAGCAGTTGGGTTGGGGACAGTTTGGTGTCATTAGAACATGCTCTGACAAAATGACCGGAGAGGTTTTGGCGTGCAAATCGATTGCGAAAGATAGGCTGGTTACTTCAGATGATATGCAAAGTGTTAAACTTGAGATTGAGATCATGGCAAAGTTATCTGGGCACCCTAATGTTGTAGATCTCAAGGCAGTTTATGAAGAAGAAGATTTCGTTCATTTGGTGATGGAGCTTTGTGCTGGAGGGGAGCTGTTTCACCTGTTAGAGAAGCATGGACGGTTTTCTGAATCGGAAGGCAGGGTTCTCTTTAGGCATCTCATGAAGATGGTTTTGTATTGTCATGAAAATGGTGTTGTTCACCGAGATTTGAAGCCTGAAAACATTCTCTTAGCAACTAAATCCTTCTCATCTCCAATTAAATTGGCTGACTTTGGACTTGCAACCTACATCAAGCCTGGACAGAATTTACACGGGTTAGTCGGGAGTCCATTTTATATTGCTCCGGAGGTATTGGCAGGTGCATATAACCAAGCTGCCGATATATGGAGTGCTGGCGTTATTCTTTACATTCTACTGAGTGGAATGCCGCCGTTTTGGGGGAAGACGAAGTCGCGGATATTTGAAGCTGTTAAGGCTGCTGATTTGAGGTTCCCTTCTGAACCGTGGGATCGCATCTCTGTATCTGCTAAGGATTTAATTAGGCGAATGCTCTGCGTAGAACCTTCTCAAAGGCTCACTGCTCAGGAGGTTTTAGACCATTACTGGATGGATAGCAATCCAACAGATATGGAACAACTAAGTGAACATAAAATCAAAAGTTGTGGAGAGTGGCATCTTGGTGGCGACTCATTCTCTGAGTCATTTATGTCCAGGAATAAGGATATTAGCTTTGGTGCTGGGTCACCTACATGTGACGCTCAATCACCTACATTCACGTGCAAATCGTCATTTTCCTCAATTTTCGTGGAGCCAGTGACACCTTTATCTGCTTCTGGTGGGTTTTCATTTCGAAGCTCAGGTGGTTCCACATGTATGGAATTTTCTTCACCTGTTCCCTCGATGCCTAGCTTTGCATTTCTCAGCCCTACTTCTGTTGTTGAGCAAAAGAGTATTATATTTGAGTTCTCGTCTAACACATCAGAAGTAAATGGAATTGTTGGAGATTCTTCTCTTTGCTTTGGAAATGATGTTAAAGAAAGGGATCACAAGCCTGTAGAGACTAAAAGGGCAAGTGTAACAAATTGTAACAGGACATTGGGATTCCACAGCAAGAGAAACCGTACGATTGGACTTGACCACCCCCCCCCCGCCGCACCCGAAGACCCCgaaaagaagaagaaaaaagaagaaaagGCTAGAGAGAAGCAATTGAAGAAAGAGAAATTTCTTCAAAAGCAAGCTCAGCAACAACAAGCGCAACAATCATCCAATGCCTCTAAAAAGAGTGAAAAAAAAACTGTGAAGCGTGGCGCGGAGGATGACAATCCTGCTGACTACATTGATCCTGAGACTCCATTGGGTGATAAGAAACAAATGTCGCGGCAATTGGCGAAACAGTATAACCCAACTGCCGTGGAGAAATCGTGGTATGAGTGGTGGGAGAAATCAAAGTATTTTGTGGCAGATGCTAGCAGCTCCAAACCACCTTTTGTTATTGTTTTGCCTCCACCAAATGTGACTGGTGCTCTCCATATTGGTCATGCTCTAACAGCTGCAATAGAGGATACAATGATTCGTTGGCGTAGAATGTCTGGATACAATACTTTGTGGGTGCCTGGGATGGATCATGCTGGAATTGCCACACAGGTAGTTGTGGAAAAAAAGTTAATGCGTGAAAATCAACTAACCAGACATGATTTGGGCCGTGAAAAATTTGTCGCAGAGGTTTGGGAGTGGAAAAACAAGTTTGGGGGCACAATTTTGCAACAATTACGCCGATTAGGAGCCTCTCTGGACTGGTCTCGTGAGTGCTTCACAATGGATGAGAAAAGATCTAAGGCTGTGACGGAGGCTTTTGTGAGGCTTCACAAGCAAGGCCTTATCTATAGGGACATTCGCTTAGTCAATTGGGATTGTGTGTTACGAACTGCAATATCTGATATTGAGGTGGAACATATTGATGTAAAAGAAAAGACCTTAATAAAGGTTCCCGGATACGACAAACCTGTTGAGTTTGGAGCTTTGAGAAAATTTGCATACATTGTGGAAGGGGGTCTAGGTGAAATTGTTGTTGCCACAACTAGAATAGAAACTATGCTTGGCGACACTGCTATTGCTGTTCACCCTGCTGATGAACGATACAGCCAATTTCATGGAAAATATGCTGTTCACCCATTTAATGGCAAAAAAATTCCTATAATTTGTGATGCTGAGCTTGTTGATCCAAATTTCGGGACAGGTGCTGTTAAGATTACACCAGCACATGATCCCAATGATTTTAACGTTGGAAAACGTCACAACCTTGAGTTTGTTAATATTCTCACTGACGATGGAAGAATAAATGCCAATGGTGGCTCCGAATTTTTGAACATGCCACGATTTATAGCCCGGGAAGCAATAACAGAAGCATTGCAAAAGAAGGGCCTTTATCGAGGTTCTGAAAACAATGAGATGCGCCTTGCCGTATGTTCAAGAAGCAATGATGTTATAGAGCCCATGATAAAGCCACAGTGGTATGTCAATTGCACTGATATGGCTAAGCAAGCTCTTCATGCGGTCACGGACGAGGAAAACAAAACAGTGGAGATTATTCCGAAACAATATGTGGCTGATTGGAAGAGATGGCTAGAAAACATCCGTGATTGGTGCATTTCGCGGCAGCTATGGTGGGGTCACCAAGTTCCTGCATGGTATGTCACTTTAGAGGATGATTTACTGCAGGACTTGGGTGCTTACGATGATCATTGGATAGTGGCAAGAAATGAAGAGAATGCTCAAGATGAGGCTAACCAAAAGTATAATGGAAAGAAGTTTCATCTAACCCGGGACCCTGACGTTCTTGATACGTGGTTTTCTTCTGGTCTGTTTCCATTAACTGTCCTGGGATGGCCTGATGACTCAGAAGACCTAAAGGCATTCTATCCAACTTCTGTTTTGGAAACTGGTCACGATATCCTCTTTTTCTGGGTTGCCCGTATGGTTATGTTAGGAATGAAGTTGGGTGGTGATGTGCCTTTTAGTAAGATTTATTTGCACCCCATGATACGTGATGCACATGGGCGCAAGATGTCTAAGTCTTTGGGGAATGTTATTGATCCCATTGAGGTGATAAATGGGATATCACTGGAAGGCCTAAATAAGAGGTTAGAAGGTGGTAACCTTGACCCTAAAGAACTAGCCGTTGCCATTGAGGGTCAGAAGAAGGACTTTCCAAACGGTATTGATGAATGTGGTGCTGATGCCCTCCGTTTTGCCCTGGTCTCATACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGCCAATGGTGTAATAAGTTATGGAATGCAGTACGATTTGCTATGAGCAAGCTAGGAGATGATTATATCCCTCCTGCAAATTTGACTCCAGATGCTCTCCCATTTAGCTGCCAGTGGATACTATCTGTGTTGAACAAAACCATATCCAAGATAATCCACTCTCTAGAATCATCTGAATTCTCGCAAGCTACCACTGCTGTGTATTCATGGTGGCAGTATCAATTGTGTGATGTGTTCATTGAAGTGATCAAGCCGTACTTTGCTGGCAATGATCCCAAGTATGCTTCCGAAAGACAGTTTGCTCAAGATACTTTGTGGTTTTGTCTGGACAATGGCTTGCGATTGCTTCATCCTTTTATGCCTTTTGTCACGGAAGAATTGTGGCAACGCCTTCCTGCGCCCAGGGAATCTAAGAGATCAGAATCTATCATGATATCTGATTATCCGTCAACTATAGAGAGCTGGAATAATGAAAGGGTAGAGAATGAGATGGACCTCATTGAGTCTACTGTTAAGTCTCTCAGGTCACTGGCAAAAGAGAGACGTGACAGGCGACCTGCTTTTGTTCTCTGCCGAACACCGGCGGTTGCAGAGATTATTAACAGCCATCAACTAGAGATTGCAACACTAGCTAATCTATCCTCTTTGACTGTAATCACTGAAAATGAAGCTGTTCCATCTGGATATGCTGATGCTGTCGTAAATGAAAGCATTTCTGTTTATCTAGAGTTTCAAGGAATTAATTCTGCAGAAGCTGAGCTTGCAAGGATGAAGAAGATAGATGAGCTAAAGAAGCAAATAGAGAGATTAGAAAAGATTATGAACGCTCCGGGTTATGAAGAGAAGGTTTCGCCACAGATTCGAGCCAAGAATGACGAGAAGCTAGAATCCCTAAAGGAGCGATTATTACTTGAGGAAACAGCTGGGTTGAGTCTCTAG 4548 0.4299 MAVVAESDSSSKRSTSFNCYKVASLVETILDAKQTSNLKDRYILGEQLGWGQFGVIRTCSDKMTGEVLACKSIAKDRLVTSDDMQSVKLEIEIMAKLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKHGRFSESEGRVLFRHLMKMVLYCHENGVVHRDLKPENILLATKSFSSPIKLADFGLATYIKPGQNLHGLVGSPFYIAPEVLAGAYNQAADIWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWDRISVSAKDLIRRMLCVEPSQRLTAQEVLDHYWMDSNPTDMEQLSEHKIKSCGEWHLGGDSFSESFMSRNKDISFGAGSPTCDAQSPTFTCKSSFSSIFVEPVTPLSASGGFSFRSSGGSTCMEFSSPVPSMPSFAFLSPTSVVEQKSIIFEFSSNTSEVNGIVGDSSLCFGNDVKERDHKPVETKRASVTNCNRTLGFHSKRNRTIGLDHPPPAAPEDPEKKKKKEEKAREKQLKKEKFLQKQAQQQQAQQSSNASKKSEKKTVKRGAEDDNPADYIDPETPLGDKKQMSRQLAKQYNPTAVEKSWYEWWEKSKYFVADASSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTMIRWRRMSGYNTLWVPGMDHAGIATQVVVEKKLMRENQLTRHDLGREKFVAEVWEWKNKFGGTILQQLRRLGASLDWSRECFTMDEKRSKAVTEAFVRLHKQGLIYRDIRLVNWDCVLRTAISDIEVEHIDVKEKTLIKVPGYDKPVEFGALRKFAYIVEGGLGEIVVATTRIETMLGDTAIAVHPADERYSQFHGKYAVHPFNGKKIPIICDAELVDPNFGTGAVKITPAHDPNDFNVGKRHNLEFVNILTDDGRINANGGSEFLNMPRFIAREAITEALQKKGLYRGSENNEMRLAVCSRSNDVIEPMIKPQWYVNCTDMAKQALHAVTDEENKTVEIIPKQYVADWKRWLENIRDWCISRQLWWGHQVPAWYVTLEDDLLQDLGAYDDHWIVARNEENAQDEANQKYNGKKFHLTRDPDVLDTWFSSGLFPLTVLGWPDDSEDLKAFYPTSVLETGHDILFFWVARMVMLGMKLGGDVPFSKIYLHPMIRDAHGRKMSKSLGNVIDPIEVINGISLEGLNKRLEGGNLDPKELAVAIEGQKKDFPNGIDECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPANLTPDALPFSCQWILSVLNKTISKIIHSLESSEFSQATTAVYSWWQYQLCDVFIEVIKPYFAGNDPKYASERQFAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPAPRESKRSESIMISDYPSTIESWNNERVENEMDLIESTVKSLRSLAKERRDRRPAFVLCRTPAVAEIINSHQLEIATLANLSSLTVITENEAVPSGYADAVVNESISVYLEFQGINSAEAELARMKKIDELKKQIERLEKIMNAPGYEEKVSPQIRAKNDEKLESLKERLLLEETAGLSL 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01238 1515 Gene3D - 1155 1385 - -
Car04g01238 1515 Coils Coil 1360 1380 - -
Car04g01238 1515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Car04g01238 1515 PRINTS Valyl-tRNA synthetase signature 1071 1089 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Car04g01238 1515 PRINTS Valyl-tRNA synthetase signature 922 935 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Car04g01238 1515 PRINTS Valyl-tRNA synthetase signature 594 605 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Car04g01238 1515 PRINTS Valyl-tRNA synthetase signature 1040 1061 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Car04g01238 1515 PRINTS Valyl-tRNA synthetase signature 805 822 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Car04g01238 1515 CDD ValRS_core 592 1195 - -
Car04g01238 1515 CDD STKc_CAMK 41 299 - -
Car04g01238 1515 PANTHER VALYL-TRNA SYNTHETASES 484 1502 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Car04g01238 1515 Gene3D Transferase(Phosphotransferase) domain 1 129 325 - -
Car04g01238 1515 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 601 612 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car04g01238 1515 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 1207 1462 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car04g01238 1515 Coils Coil 489 517 - -
Car04g01238 1515 MobiDBLite consensus disorder prediction 460 556 - -
Car04g01238 1515 Gene3D HUPs 561 761 IPR014729 -
Car04g01238 1515 Gene3D Phosphorylase Kinase; domain 1 43 128 - -
Car04g01238 1515 ProSiteProfiles Protein kinase domain profile. 42 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01238 1515 Pfam Anticodon-binding domain of tRNA ligase 1241 1383 IPR013155 GO:0004812|GO:0006418
Car04g01238 1515 MobiDBLite consensus disorder prediction 481 506 - -
Car04g01238 1515 Pfam tRNA synthetases class I (I, L, M and V) 573 1196 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Car04g01238 1515 MobiDBLite consensus disorder prediction 507 524 - -
Car04g01238 1515 Gene3D HUPs 886 1120 IPR014729 -
Car04g01238 1515 SUPERFAMILY Nucleotidylyl transferase 560 1205 - -
Car04g01238 1515 SMART serkin_6 42 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01238 1515 Pfam Protein kinase domain 44 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01238 1515 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 768 916 IPR009008 GO:0002161|GO:0006418
Car04g01238 1515 TIGRFAM valS: valine--tRNA ligase 561 1498 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Car04g01238 1515 MobiDBLite consensus disorder prediction 525 540 - -
Car04g01238 1515 PANTHER BNAA08G31530D PROTEIN 484 1502 - -
Car04g01238 1515 Hamap Valine--tRNA ligase [valS]. 560 1514 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Car04g01238 1515 Gene3D - 1445 1510 IPR037118 -
Car04g01238 1515 SUPERFAMILY Protein kinase-like (PK-like) 40 376 IPR011009 -
Car04g01238 1515 ProSitePatterns Protein kinases ATP-binding region signature. 48 75 IPR017441 GO:0005524
Car04g01238 1515 CDD Anticodon_Ia_Val 1195 1334 IPR033705 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01238 Car-Chr4 12694242 12708871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01238 32 300 EF-hand Containing Proteins AT5G19360 50.186 2.52e-87 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Car04g01238 tRNA-synt_1 1.4e-198 CL0039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01238 K01873 - gmx:100798111 1786.54