Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01237 ATGTTTACTATGAATCATATTTCAGAGTCACATGAttctgcttcttcttcttcttcttcGGAGAAGTTTCTTGCGGCGAGCATGCCGAAGAAGAGAGCAGGGAGGAAGAAGTTTAGGGAAACACGGCACCCGGTGTACCGTGGTGTAAGAAAGAGGGACTCCGGCAAGTGGGTGTGTGAAGTGAGGGAACCTAACAAGAAGACAAGAATTTGGCTCGGGACATTTCCTAATCCCGAGATGGCGGCGCGTGCGCATGACGTCGCTGCGATTGCGCTCAGGGGAAAGTCTGCTTGTCTTAATTTTGCTGATTCTGCTTGGAGGTTGCCGGTTCCGGCTACGACGGATGCAAGAGATATTCAAAAGGCGGCAGCTGAGGCGGCGGAGGCTTTTCGGGCGgagagtgagtttgagaggaaggagagtgagaCGAAGATGGCGGAAGTGGCGATGGAGCAACTAGTGGAAGAAGAAGAAGAGACGGTGCCGGAGTATCTGAGAAACATGGTGCTGATGTCACCGGCACATTGCTGGGGGAACGACTATGGTGTTGCTGACGTGGAATTTGATGATACTGAAGTTTCATTGTGGAGTTATTCAATTTAA 603 0.4643 MFTMNHISESHDSASSSSSSEKFLAASMPKKRAGRKKFRETRHPVYRGVRKRDSGKWVCEVREPNKKTRIWLGTFPNPEMAARAHDVAAIALRGKSACLNFADSAWRLPVPATTDARDIQKAAAEAAEAFRAESEFERKESETKMAEVAMEQLVEEEEETVPEYLRNMVLMSPAHCWGNDYGVADVEFDDTEVSLWSYSI 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01237 200 MobiDBLite consensus disorder prediction 1 24 - -
Car04g01237 200 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Car04g01237 200 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Car04g01237 200 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Car04g01237 200 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Car04g01237 200 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Car04g01237 200 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Car04g01237 200 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Car04g01237 200 SUPERFAMILY DNA-binding domain 45 104 IPR016177 GO:0003677
Car04g01237 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 200 IPR045277 GO:0003700
Car04g01237 200 MobiDBLite consensus disorder prediction 1 39 - -
Car04g01237 200 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 10 200 - -
Car04g01237 200 Coils Coil 136 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01237 Car-Chr4 12692961 12693897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01237 7 198 AP2-EREBP Transcription Factor Family AT5G51990 53.211 8.96e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g01237 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01237 - K09286 aprc:113872706 262.692