Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01236 ATGGATGGAAAACCTTACCCTCCTCCTGCAGTACTGCCATGTATAGAAGTCtcatctaattcatcaccaacaccttcagcttcagcttcatcttcatctccatcAGTACGATACCGTGGAACACGTTGCCGGAGCGGAAAATGGGTATCGGAGATACGTGAGCCACGTAAAACGAAGCGCATTTGGTTAGGAACTTACCCTACATCTGAAATGGCTGCTGCTGCTTACGACGTTGCTGCTCTCGCTTTGAAAGGACCTGATACGTTTCTCAATTTTCCTAATTCAATTCTCTCTTATCCTATTCCTGCTTCAATGTCTCCAACTGATATTCGTGCTGCTGCTGAAGCTGCAGCACAAGCTAGAATCGTCAATGTAATCAGATCTTCTCAATCTCAACAAGAAGAAAAAGAAAAAGAAAACCCTTCATGTTTTGAAGGATCTAATTCAGATAGTGGACATCAGCAACAATATATTGATGAAGATGAGTTGTTGAATATGCCAAATTTGTTGGATGATATGGCGAGAGGAATGCAGGTTAGTCCACCAAGGATCACTTCATTTTCTAATTATTCTGATCATGATAATTCACCCTCAAATTCTGATTCTGGAGGAGGAGATAATCTTTGGAGTTACACTTTTTGA 642 0.3769 MDGKPYPPPAVLPCIEVSSNSSPTPSASASSSSPSVRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPTSEMAAAAYDVAALALKGPDTFLNFPNSILSYPIPASMSPTDIRAAAEAAAQARIVNVIRSSQSQQEEKEKENPSCFEGSNSDSGHQQQYIDEDELLNMPNLLDDMARGMQVSPPRITSFSNYSDHDNSPSNSDSGGGDNLWSYTF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01236 213 MobiDBLite consensus disorder prediction 180 213 - -
Car04g01236 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 211 - -
Car04g01236 213 MobiDBLite consensus disorder prediction 128 154 - -
Car04g01236 213 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Car04g01236 213 Pfam AP2 domain 37 85 IPR001471 GO:0003700|GO:0006355
Car04g01236 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 29 211 - -
Car04g01236 213 MobiDBLite consensus disorder prediction 15 39 - -
Car04g01236 213 MobiDBLite consensus disorder prediction 181 213 - -
Car04g01236 213 SMART rav1_2 37 99 IPR001471 GO:0003700|GO:0006355
Car04g01236 213 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Car04g01236 213 ProSiteProfiles AP2/ERF domain profile. 37 93 IPR001471 GO:0003700|GO:0006355
Car04g01236 213 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Car04g01236 213 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01236 Car-Chr4 12680126 12681523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01236 26 211 AP2-EREBP Transcription Factor Family AT5G52020 52.604 1.41e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g01236 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01236 - - mtr:MTR_1g101550 237.654