Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01234 ATGGAAGATGAGAGAGATGCTGAGGCTGCAATTCGTGCCCTTGATCGGATAGAATTTGGCCGAAAAGGGCGCAGGCTTCGCGTAGAATGGACAAAGCAAGAGCGTGGCATCCGAAGGCCTGCTGAACGTCCAAGAAGATCTTCAGCTAATGCAAGACCATCAAAAACATTATTTGTCATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTTAATGTGAGGATCAGAAGAAATTTTGCATTTGTTCAGTATGAATCAGAAGATGATGCTTGCAAAGCACTGGAAGCTACAAATATGAGCAAGTTGTTGGATCGAGTTATTTCCGTTGAATTTGCCGCTAAAGATGATGATATTAGGCGAAATGGACATAGCCCTGAGAGAGGCCGTGATCGTCAACGTGACAGAAGCCGTGATGGAAGGCGATCACCCAGTCCTTATCGTAGAGAAAGGGGCAGTCCTGATTATGGTCGTGGCCCCAGTCCATATAAGAGGGAGAGGAGCAGCCCTGACTATGGGCGTGGCGTAAGCCGTAGTAGAAGCCCCCATCGGAGAGAGCGAGGTAGCCCTGCTTATGGGCGTAGAAGCATTAGTCCTTATAGAAGAGATAGGGATGGTTCTGAGCCTGTTCGTGACACCAGCCGCAGTCCTTATCAGAAAGAGCGGGAGAGAACTGACAGGTCTCTCTCCCATAGTCCCGAAGAAGGAGAGAGGATAGACCTTAAAAAAGGTCATAGATCTGGTGATAGCCCTTATGATACTGTGAAGGATAGCCCTGAAAATGGCCATGTCCCTAGACATAGTCCTGATGCAAAAGGGAACCCCAGCCCATACAATGAGTATAGAGGGAGCCCTAGTCCTGATGCAAAAGGGAACCCCACTTCATACAATGATCATGGAGGGAGCCCTAATACTATGCCTGAACCCAGGGACAGTCCCAATTATGGTGGTCCTGAAAGTCCCATGCATGAACAATACCGCAGCCAGAGCCAGTCACCCCCTGCAGAAGAATGA 1047 0.4823 MEDERDAEAAIRALDRIEFGRKGRRLRVEWTKQERGIRRPAERPRRSSANARPSKTLFVINFDTYHTRTRDLERHFEPYGKIVNVRIRRNFAFVQYESEDDACKALEATNMSKLLDRVISVEFAAKDDDIRRNGHSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGRGVSRSRSPHRRERGSPAYGRRSISPYRRDRDGSEPVRDTSRSPYQKERERTDRSLSHSPEEGERIDLKKGHRSGDSPYDTVKDSPENGHVPRHSPDAKGNPSPYNEYRGSPSPDAKGNPTSYNDHGGSPNTMPEPRDSPNYGGPESPMHEQYRSQSQSPPAEE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01234 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 126 IPR000504 GO:0003723
Car04g01234 348 MobiDBLite consensus disorder prediction 334 348 - -
Car04g01234 348 MobiDBLite consensus disorder prediction 129 264 - -
Car04g01234 348 CDD RRM2_AtRSp31_like 56 125 - -
Car04g01234 348 MobiDBLite consensus disorder prediction 299 313 - -
Car04g01234 348 MobiDBLite consensus disorder prediction 129 348 - -
Car04g01234 348 SMART rrm1_1 56 122 IPR000504 GO:0003723
Car04g01234 348 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 236 - -
Car04g01234 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 119 IPR000504 GO:0003723
Car04g01234 348 Gene3D - 41 138 IPR012677 -
Car04g01234 348 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Car04g01234 348 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 236 - -
Car04g01234 348 SUPERFAMILY RNA-binding domain, RBD 1 45 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01234 Car-Chr4 12666106 12670062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01234 22 128 Eukaryotic Initiation Factors Gene Family AT3G16380 30.702 2.37e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01234 K12893 - gmx:100796509 478.404