LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g01227	ATGGGATTTCTCCGGCGTCTCTTTGGCGCCAAAAAACAGGGTCCTCCTTCCGACGGCTCAAGCTCCAAATCTGATAACAACAAGAAAAGATGGGCCTTCGCCAAACAAAGCAGCAGGAGAAAGTTACTCCCACCGCCACCCTCCGGATTTTCTCAATTTGACTCCTCCGCTTCCATAGTCGATGCCAACAAACATGCTATCGCCGTTGCCGCCGCTACTGCAGCAGTCGCCGAGGCTGCTCTAACCGCCGCGCATGCAGCTGCAGAGGTGGTCAGACTGACAAGCACCGGGGTTGCTGGAAGAAGTACCATAAGAAGGCCTAAAGCGCGTGTTGGCCAGCCACGGTTGCCGGAGGAGACTGCCGCCGTTCGAATTCAGTCGGCTTTCCGTGGTTACCTGGCAAGGAGGGCATTGAGAGCACTTAAAGCATTAGTAAAGTTGCAAGCACTAGTTAGGGGCCACATTGTGAGAAAGCAAACTTCAGATATGCTAAGGCGCATGCAAACATTGGTGAGACTACAGACACAGGCACGTGCAACTCGTGCGCACTTGTCATCAGATAATGTGCTGCCTTCTTTCAAGTCTTCACTTTCTGAGTACCCTCCTGTCCATGAAGAATATGAGCACCCACATCATGTCTACAGTACAAAATTAGGTGGATCGTCCATCCTGAAGAGAAGTAGTTCCAATGCAAACTTTAGGAAGATTGATTCAGAAAGAACACGATTTGGGTCCAGTTGGTTAGACCAATATTGGATGGAATGTAGTGAAAGCAAAGATGGTTCATTGAAGAAAAATGAACAACAACACCCTGATCATGAAAAAATTGATAAGATTCTCGAAGTAGATACTTGGAAACCACACTTCAAAACCAATCATCACACTACAAGCTCCCTTCAGACACCACACTATCATTTCAGTTCTAACTATAATAATAATGAGAAATGTATGGCACATCATGAGTCTATATCAAAACATTCAACAAAAGCTCAAAATCAAAGTCTAGCTTCACGAACTACTGATAATAGTCCACAAACATTTTCTGCAAGGAAAAGTCCCTTTACACCTACAAAGAGTGAGTGTTCATGGGGTTTCTTCAATGGATACTCTGGTTACCCTAATTATATGGCTAACACTGAATCTTCTCGAGCCAAGGTTAGATCACAGAGTGCACCGAGACAAAGGATTGAGTTTGACAGATACAGTTCTTCTACTAGAAGACATTCTCAAGGTCTTTGTGATGTGGACCCTACTAATTCCGATCAAGATTCTTCTGATTCAAAGAGCAACAAAGTCTCACATGTTTTGAATCGTTTCAATAGAAATAGGAGTACCTTTTTAAGGTAA	1347	0.4432	MGFLRRLFGAKKQGPPSDGSSSKSDNNKKRWAFAKQSSRRKLLPPPPSGFSQFDSSASIVDANKHAIAVAAATAAVAEAALTAAHAAAEVVRLTSTGVAGRSTIRRPKARVGQPRLPEETAAVRIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTSDMLRRMQTLVRLQTQARATRAHLSSDNVLPSFKSSLSEYPPVHEEYEHPHHVYSTKLGGSSILKRSSSNANFRKIDSERTRFGSSWLDQYWMECSESKDGSLKKNEQQHPDHEKIDKILEVDTWKPHFKTNHHTTSSLQTPHYHFSSNYNNNEKCMAHHESISKHSTKAQNQSLASRTTDNSPQTFSARKSPFTPTKSECSWGFFNGYSGYPNYMANTESSRAKVRSQSAPRQRIEFDRYSSSTRRHSQGLCDVDPTNSDQDSSDSKSNKVSHVLNRFNRNRSTFLR	448

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g01227	448	SMART	iq_5	117	139	IPR000048	GO:0005515
	Car04g01227	448	SMART	iq_5	140	161	IPR000048	GO:0005515
	Car04g01227	448	PANTHER	IQ-DOMAIN 5-RELATED	1	338	-	-
	Car04g01227	448	PANTHER	IQ-DOMAIN 5-RELATED	343	446	-	-
	Car04g01227	448	MobiDBLite	consensus disorder prediction	405	436	-	-
	Car04g01227	448	Pfam	IQ calmodulin-binding motif	142	159	IPR000048	GO:0005515
	Car04g01227	448	Pfam	IQ calmodulin-binding motif	121	139	IPR000048	GO:0005515
	Car04g01227	448	MobiDBLite	consensus disorder prediction	327	356	-	-
	Car04g01227	448	MobiDBLite	consensus disorder prediction	390	404	-	-
	Car04g01227	448	Gene3D	-	117	169	-	-
	Car04g01227	448	ProSiteProfiles	IQ motif profile.	118	146	IPR000048	GO:0005515
	Car04g01227	448	MobiDBLite	consensus disorder prediction	320	356	-	-
	Car04g01227	448	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	72	163	IPR027417	-
	Car04g01227	448	Pfam	Protein of unknown function (DUF4005)	333	423	IPR025064	-
	Car04g01227	448	MobiDBLite	consensus disorder prediction	383	436	-	-
	Car04g01227	448	ProSiteProfiles	IQ motif profile.	142	169	IPR000048	GO:0005515
	Car04g01227	448	PANTHER	CALMODULIN-BINDING PROTEIN	1	338	-	-
	Car04g01227	448	PANTHER	CALMODULIN-BINDING PROTEIN	343	446	-	-
	Car04g01227	448	MobiDBLite	consensus disorder prediction	1	49	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car04g01227	Car-Chr4	12573638	12579689	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g01227	1	411	IQD Protein Family	AT5G62070	46.370	1.33e-64	211

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g01227	-		-	gmx:100783694	423.705