Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01224 ATGGAGGGTCAGAGTGAGATAGGTCTCACTGGTGAAAGTTTAGATACTAATAATATGATTGGGAGAATGAGAGAAGATGAGTATGAAAGCCGGTCCGGAAGCGATAACTTTGAAGGTATATCTGGTGATGATCAAGATGCTGGTGATGAACAGCCTAAGAGGAAGAAGAGATACCATAGACACACTCCTAATCAAATTCAAGAACTTGAATCTTTCTTTAAGGAGTGTCCTCATCCTGATGAAAAGCAAAGGTTGGATCTTAGTAAGAGACTTGGTTTGGAAAATAAGCAAGTCAAGTTCTGGTTTCAGAATCGTCGAACCCAAATGAAGACTCAGCTGGAAAGGCATGAGAACATAATGCTTAGGCAGGAAAATGAGAAGCTGAGAGGGGAGAATACTATGATGAAAGAAGCAATGTCAAATCCAGTATGTAACAACTGTGGTGGGCCAGCAATTCCTGGCCAAATTTTGTTTGAGGAGCACCAGATTAGGATTGAAAATGCTCGTCTAAAGGATGAATTGAACCGTATATGTGCCTTAACTAACAAGTTCCTTGGCAAGCCAATATCATCCTTGGCTAGTCCCATGGCTCTACAAACCTCAAATTCTGGTCTTGAACTTGGTATTGGTAGGAATGGTATGGGTGGTTCAAGCTCTCTCGGCGCTTCATTGCCAATGGGACTTGATCTCGGAGACAGTGCAATGCCTGGTATGAGATCTCCAATGGGATTGATGGGAAATAGTAACGAAATTCAGCTCGAGAGATCAGTGCTTATAGATCTTGCATTGGCTGCTATGGAGGAATTATTAAAGATGGCTCAGACAGATAGTCCTATTTGGATTAAGAGTTTGGATGGAGAGAGGGATATATtgaatcatgaagagtatgcaaggttgttttcttcttgtgttggttcaaaacccaatggttttgttgctgaagctacaagagaatctggaatagtaataatcaacagtttagcacttatggaaactttgatggatGCGAATCGATATGCGGATATGTTTCAGTCTATGATTGCTAGAGCTATCAACCTTGACGTTTTATCCGGTGGCATAGGTGGAACCAGAAATGGTGCTATACATTTGATGCATGCTGAGCTTCAATTGCTTTCACCACTAGTCCCGGTTCGTCACGTGAGATTTCTTCGATTCTGTAAGCAACATGCAGAAGGTGTATGGGCTGTGGTTGATGTTTCTATCGAAATCGGTCATGATGCTGCTAATGGACAACCATTTATAAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCTAATGGTTACTCCAAGGTCACATGGATTGAGCATTGGGAGTATGACGAGAGTGTTGTTCACCAACTCTATCGTCCATTAGTTATTTCTGGTTTCGGATTCGGTGCTCATCGATGGATTGCCACCCTCCAAAGGCAGTGTGAATGCTTGGCTATCCTCATGTCTTCTTCCATCTCAACTGATGATCACACAGCCTTGAGCCAAGCTGGTAGAAGAAGTATGTTGAAGCTGGCACAACGCATGACCAGCAACTTCTGTTCCGGGGTTTGTGCTTCGTCTGCTAGAAAGTGGGACACCCTTCAAATGGGAACTTTGAGTGATGACATGAGAGTTATGACTAGAAAAAATGTTGATGACCCTGGCGAGCCTCCCGGTATCGTGCTCAGCGCCGCGACATCTGTCTGGATGCCAGTTTCACGACAAAGACTGTTTGACTTTCTGCGTGATGAACGGCTTAGAAGCGAGTGGGACATTTTGTCTAATGGTGGACCAATGCAAGAGATGGTTCACATTGCCAAAGGACAAGGACAGGGAAATTGCGTATCTCTCCTTCGTGCCAATGCTGTTAATGCGAATGACAGCAGCATGTTGATTCTGCAAGAGACATGGATGGACACATCGTGTTCCGTGGTGGTATACGCACCAGTAGACGCACAATCCTTAAACGTAGTGATGAGCGGTGGAGATTCTGCATACGTTGCACTCTTGCCTTCAGGCTTTGCCATTCTTCCTGATGGCAATTCCTCTGACTATGGTGCCTCAAACGGAACTTTACAAAAAGGTGGTAGTATCGGCAGCGATGGTGGCGGAAGTTTGCTCACAGTTGGATTCCAAATTCTGGTGAATAGTCTTCCAACTGCAAAACTCACAATGGAATCAGTTGATACTGTTAATAATCTCATCTCATGCACCATTCAGAAGATCAAAGCTGCACTTAGAGTTGCATAA 2253 0.4177 MEGQSEIGLTGESLDTNNMIGRMREDEYESRSGSDNFEGISGDDQDAGDEQPKRKKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENEKLRGENTMMKEAMSNPVCNNCGGPAIPGQILFEEHQIRIENARLKDELNRICALTNKFLGKPISSLASPMALQTSNSGLELGIGRNGMGGSSSLGASLPMGLDLGDSAMPGMRSPMGLMGNSNEIQLERSVLIDLALAAMEELLKMAQTDSPIWIKSLDGERDILNHEEYARLFSSCVGSKPNGFVAEATRESGIVIINSLALMETLMDANRYADMFQSMIARAINLDVLSGGIGGTRNGAIHLMHAELQLLSPLVPVRHVRFLRFCKQHAEGVWAVVDVSIEIGHDAANGQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEYDESVVHQLYRPLVISGFGFGAHRWIATLQRQCECLAILMSSSISTDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDTLQMGTLSDDMRVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGQGNCVSLLRANAVNANDSSMLILQETWMDTSCSVVVYAPVDAQSLNVVMSGGDSAYVALLPSGFAILPDGNSSDYGASNGTLQKGGSIGSDGGGSLLTVGFQILVNSLPTAKLTMESVDTVNNLISCTIQKIKAALRVA 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01224 750 SUPERFAMILY Bet v1-like 254 484 - -
Car04g01224 750 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Car04g01224 750 SMART START_1 260 484 IPR002913 GO:0008289
Car04g01224 750 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 7 748 - -
Car04g01224 750 SUPERFAMILY Bet v1-like 512 744 - -
Car04g01224 750 Coils Coil 106 126 - -
Car04g01224 750 Pfam START domain 261 484 IPR002913 GO:0008289
Car04g01224 750 CDD homeodomain 54 112 IPR001356 GO:0003677
Car04g01224 750 MobiDBLite consensus disorder prediction 1 65 - -
Car04g01224 750 Gene3D - 42 128 - -
Car04g01224 750 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Car04g01224 750 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Car04g01224 750 MobiDBLite consensus disorder prediction 19 33 - -
Car04g01224 750 CDD START_ArGLABRA2_like 255 483 - -
Car04g01224 750 MobiDBLite consensus disorder prediction 1 17 - -
Car04g01224 750 ProSiteProfiles START domain profile. 251 487 IPR002913 GO:0008289
Car04g01224 750 SMART HOX_1 53 116 IPR001356 GO:0003677
Car04g01224 750 SUPERFAMILY Homeodomain-like 41 112 IPR009057 -
Car04g01224 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 7 748 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01224 Car-Chr4 12544926 12550538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01224 1 747 Homeobox Transcription Factor Family AT3G61150 59.897 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car04g01224 START 1.3e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01224 K09338 - gmx:100794400 1282.32