Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g01222 ATGCTCCACTGTTCTCATCGCATTCCTGTAAACACACActttcattcattcttcactctttctttctcttcCATGGCTTTTCCTTTCAACATTCTACTACTCTCCTACCTTCTCATTTTCCACCTATCTTACGCCATTCAATCTATTAATCAACATAACCCAGAAAAGCTTTCTCTCCTTTCTTTCAAATCCTCTCTTCAAAACTCTCACTTTCTCTCTTCATGGCACCCTGCTACTCCACATTGTAACTGGCTTGGTGTTAAATGTCAACTCGGCCGAGTCACCTCGCTCTCTCTTCCTTCTTCTTACCTTCAAGGAAAActctctttctctctttcatctctctcatctctcgttcttctcAACCTTGAGGATAACCAACTTTCCGGTGAAATCCCCGGCGAACTTGGTGAGTTGTTTCAGCTGCAAATTCTAAGACTCGGTTCTAACTCGTTCGCCGGAAATATTCCACCGGCGTTGGGGCTTTTAACGAAGCTACGTACACTCGACCTATCCGGTAATGCACTTGCCGGTGAAATACCGGAGAGTATCGGAAACTTGACTAGGCTTCAATTTCTTGACCTTAGCAACAATTTTTTATCAGGTTCTCTTCCGTTAACTCTTTTCACCGGAACGCACTCTTTGATTTCTATTGATATTTCGAACAACTCGTTTTCCGGCGAAATTCCGGCGGAAATCCGAAACTGGAAGAATCTGACTGCACTTTACGTTGGGATAAACAAGTTGTCTGGTACATTCCCTAAGGAAATTGGAGAGCTTTCGAAGCTTGAAGTTTTGTATTCACCTTCTTGTTTGATTGAAGGTCCATTACCTGAAGAAATGGAAAAGCTTGATTCGTTGACCAAACTTGACCTTTCTTATAATCCTTTGAGGTGTTCAATCCCAAAGTTTATTGGGAAGTTGAAGAATTTGAAAATTTTGAACCTTGTTTTTTCTGAGCTTAATGGGTCAGTACCAGCTGAGCTTGGAAATTGTTCAAATTTAACTTCTGTGATGATTTCTTTCAATTCACTTTCTGGGTCACTACCTCAAGAGCTTTCTCAGCTTCCTATAAAAACTTTCTCAGCTGAGAAGAATCTTCTTCATGGTCCTTTGCCTTCTTGGCTTGGAAAATGGACTAATGTTGATTCTCTTTTGCTTTCGGCGAACCGTTTTTCGGGTGTGATTCCACCTGAGCTTGGGAATTGCTCTGTGATGGAGCATCTCAGTTTGAGTAGTAACTTGTTGACAGGTACCATACCCAAGGAGCTTTGTAATGCTGCTTCACTTTTGGAGATCGATCTTGATGATAATTTCCTTAGTGGTACAATTGAGAAAGCATTTGTGAATTGTAAGAACCTTACACAGTTGGTTTTGATGAACAATCAGATTGTTGGTTCTATACCACAATACCTTTCTGAGCTTCCTTTGATGGTGTTGGACTTGGATTCCAACAATTTTAGTGGAAAAATACCTTCTAGTTTGTGGAATTTATCAACACTGATGGAATTCTCTGCTGCCAATAACAACTTGGAAGGTTCTCTTCCTATGGAGATTGGGAATGCAGTTATTCTACAAAGACTTGTTCTTAGCAATAATCGTCTTACGGGTACTATTCCTAAGAAAATTGGAAGTCTTGCAAGTCTTTCGGTTTTTAATTTGAATGGAAATATGCTTGAAGGGAACATTCCAATTGAGCTTGGTGACTGCATTTCGCTCACTACATTAGACCTTGGAAACAATCAACTCAATGGCTCTATTCCTTACAAATTGGTGGAACTAAGCCAATTACAGTGCCTTGTTCTTTCTCACAATAATCTCTCTGGGTCTATTCCTGCTAAGGAATCTTTGTATTTTCGACAACTTACTGTCCCTGATTTGAGCTTTGTTCAACACCTTGGTGTGTTTGATCTATCTCATAATAGATTGTCTGGCACCATACCTGATGAACTTGGGAGCTGTGTAGTAGTTGTGGACCTATTGCTTAGCAACAACATGCTTTCTGGGAGCATTCCTAGATCGCTCTCGCGCTTGACAAATTTAACAACTTTGGATTTGTCGGGAAACTTGTTGTCTGGTTCTATTCCACCCGAGCTTGGAGATGCTGTCACACTCCAAGGTTTATACTTGGGACATAATCAACTCTCTGGTACCATTCCTGAAAGTTTCGGAAAATTGAATGGTTTGGTGAAGCTGAATTTGACAGGAAACATGTTGTCTGGTCCAATTCCTGTTAGTTTTGGGAATATGAAGGAATTGACTCACTTGGATTTGAGCTTTAATGAGCTCAATGGCGAGCTTCCGTCGATTCTTTCTGGTGTTCAAAGCCTTGTCGGTCTTTATGTGCAGAACAACAGGCTTTCGGGCCATGTCGGAGAGCTTTTCTTAAACTCCATGACATGGAGGATTGAGACAATGAATTTAAGTTGCAATTGCTTCGATGGAAACTTGCCTTGGTCTTTAAGAAATCTTTCCTACTTGACAATTTTGGATCTTCATCAAAACTTGTTGACCGGAGAAATTCCTTTGGACCTTGGGAATCTAATGCAACTTGAGTATTTTGATGTTTCAGGTAATCAATTATCTGGAAAGATTCCAGAGAAGTTATGCAGCATAGTTAATTTGAATTACGTAGATTTCTCTCAAAACAGATTGGAAGGGCCTATTCCCACAAGTGGCATTTGCCAAAACCTATCTAGAGTTAGATTTTTGGGAAACAAAAACCTTTGTGGCCAAATGTTGGGTACAAATTGTCAAGTCAAAAGCATTGGTAGATATGCATTGTTTAATGCATGGAGACTTGGTGGAATTGCCATCACAGTAATATTTATAACCTTGATCATTGCTTTTGTTCTGCATAGATGGATTGGCAGGAAGCAGAATGATCCCGAGGAACTCGAGGATCGTAAACTCAACAGTTATGTGGATCAGAATCTCTATTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATTAATGTAGCGATGTTTGAGCAGCCTCTTCTGAAATTAACTTTGGTCGATATCCTCGAAGCTACTGACAATTTCAGCAAGACAAACATAATTGGAGATGGAGGTTTCGGAACTGTGTATAAGGCTACTCTACCGAATGGAAGAACAGTTGCTGTGAAGAAGCTCAGCGAAGCTAAAACGCAGGGTCATCGCGAGTTCATGGCTGAAATGGAAACATTGGGAAAGGTAAAGCATCAAAATCTAGTTGCATTGCTTGGTTATTGCTCAATGGGTGAAGAGAAACTCCTTGTCTATGAATACATGGTAAATGGAAGTTTAGACCTTTGGTTGAGAAATAGGACAGGTGGACTCGAAATCCTCAATTGGAACAAACGTTACCAAATCGCGACAGGTGCTGCTAAAGGATTAGCTTTCCTGCATCATGGTTTCATACCTCACATCATTCATAGAGATGTCAAAGCTAGCAACATTTTACTAAATGAAGATTTTGAGCCAAAAGTTGCTGACTTTGGACTTGCAAGACTTATCAGTGCATGTGAAACTCATGTCACAACGGATATTGCTGGAACATTTGGTTACATTCCACCTGAGTATGGACAGAGTGGAAGGTCAACAACGAGAGGCGATGTCTATAGTTTCGGCGTCATTTTACTTGAATTGGTGACAGGAAAAGAGCCAACAGGACCTGATTTTAAAGAGATTGAAGGCGGTAACTTGGTTGGATGGGTTGGTCAGAAGATCAAGAAGGGGCAGGCTGCTGATGTTCTTGATCCAACTGTTCTCGACGCTGATTCGAAGCAGACGATGCTTCAAATGCTGCAGATTGCTTGTGTGTGCCTCTCTGATAATCCTGCAAACAGACCTACTATGTTTCAAGTTCACAAATTCTTGAAGGGAATGAAAGGAGATCAGTAA 3891 0.3994 MLHCSHRIPVNTHFHSFFTLSFSSMAFPFNILLLSYLLIFHLSYAIQSINQHNPEKLSLLSFKSSLQNSHFLSSWHPATPHCNWLGVKCQLGRVTSLSLPSSYLQGKLSFSLSSLSSLVLLNLEDNQLSGEIPGELGELFQLQILRLGSNSFAGNIPPALGLLTKLRTLDLSGNALAGEIPESIGNLTRLQFLDLSNNFLSGSLPLTLFTGTHSLISIDISNNSFSGEIPAEIRNWKNLTALYVGINKLSGTFPKEIGELSKLEVLYSPSCLIEGPLPEEMEKLDSLTKLDLSYNPLRCSIPKFIGKLKNLKILNLVFSELNGSVPAELGNCSNLTSVMISFNSLSGSLPQELSQLPIKTFSAEKNLLHGPLPSWLGKWTNVDSLLLSANRFSGVIPPELGNCSVMEHLSLSSNLLTGTIPKELCNAASLLEIDLDDNFLSGTIEKAFVNCKNLTQLVLMNNQIVGSIPQYLSELPLMVLDLDSNNFSGKIPSSLWNLSTLMEFSAANNNLEGSLPMEIGNAVILQRLVLSNNRLTGTIPKKIGSLASLSVFNLNGNMLEGNIPIELGDCISLTTLDLGNNQLNGSIPYKLVELSQLQCLVLSHNNLSGSIPAKESLYFRQLTVPDLSFVQHLGVFDLSHNRLSGTIPDELGSCVVVVDLLLSNNMLSGSIPRSLSRLTNLTTLDLSGNLLSGSIPPELGDAVTLQGLYLGHNQLSGTIPESFGKLNGLVKLNLTGNMLSGPIPVSFGNMKELTHLDLSFNELNGELPSILSGVQSLVGLYVQNNRLSGHVGELFLNSMTWRIETMNLSCNCFDGNLPWSLRNLSYLTILDLHQNLLTGEIPLDLGNLMQLEYFDVSGNQLSGKIPEKLCSIVNLNYVDFSQNRLEGPIPTSGICQNLSRVRFLGNKNLCGQMLGTNCQVKSIGRYALFNAWRLGGIAITVIFITLIIAFVLHRWIGRKQNDPEELEDRKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKTNIIGDGGFGTVYKATLPNGRTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVALLGYCSMGEEKLLVYEYMVNGSLDLWLRNRTGGLEILNWNKRYQIATGAAKGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHVTTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVGQKIKKGQAADVLDPTVLDADSKQTMLQMLQIACVCLSDNPANRPTMFQVHKFLKGMKGDQ 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g01222 1296 ProSiteProfiles Leucine-rich repeat profile. 596 618 IPR001611 GO:0005515
Car04g01222 1296 SUPERFAMILY RNI-like 121 607 - -
Car04g01222 1296 SUPERFAMILY L domain-like 618 911 - -
Car04g01222 1296 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 475 700 - -
Car04g01222 1296 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 626 793 - -
Car04g01222 1296 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 32 356 - -
Car04g01222 1296 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 705 902 - -
Car04g01222 1296 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 802 1292 - -
Car04g01222 1296 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 359 628 - -
Car04g01222 1296 SMART LRR_typ_2 630 654 IPR003591 -
Car04g01222 1296 SMART LRR_typ_2 546 570 IPR003591 -
Car04g01222 1296 SMART LRR_typ_2 594 618 IPR003591 -
Car04g01222 1296 SMART LRR_typ_2 678 702 IPR003591 -
Car04g01222 1296 SMART LRR_typ_2 284 308 IPR003591 -
Car04g01222 1296 SMART LRR_typ_2 750 773 IPR003591 -
Car04g01222 1296 SMART LRR_typ_2 163 186 IPR003591 -
Car04g01222 1296 SMART LRR_typ_2 187 211 IPR003591 -
Car04g01222 1296 SMART LRR_typ_2 824 848 IPR003591 -
Car04g01222 1296 SMART LRR_typ_2 115 139 IPR003591 -
Car04g01222 1296 Pfam Leucine Rich Repeat 286 308 IPR001611 GO:0005515
Car04g01222 1296 ProSiteProfiles Protein kinase domain profile. 1017 1289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01222 1296 SUPERFAMILY Protein kinase-like (PK-like) 998 1289 IPR011009 -
Car04g01222 1296 Pfam Protein tyrosine and serine/threonine kinase 1020 1289 IPR001245 GO:0004672|GO:0006468
Car04g01222 1296 Gene3D Phosphorylase Kinase; domain 1 979 1092 - -
Car04g01222 1296 Gene3D Transferase(Phosphotransferase) domain 1 1093 1296 - -
Car04g01222 1296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1139 1151 IPR008271 GO:0004672|GO:0006468
Car04g01222 1296 PRINTS Leucine-rich repeat signature 190 203 - -
Car04g01222 1296 PRINTS Leucine-rich repeat signature 678 691 - -
Car04g01222 1296 SMART serkin_6 1017 1289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g01222 1296 Gene3D Ribonuclease Inhibitor 505 619 IPR032675 -
Car04g01222 1296 Gene3D Ribonuclease Inhibitor 52 209 IPR032675 -
Car04g01222 1296 Gene3D Ribonuclease Inhibitor 359 426 IPR032675 -
Car04g01222 1296 Gene3D Ribonuclease Inhibitor 427 504 IPR032675 -
Car04g01222 1296 Pfam Leucine rich repeat N-terminal domain 52 89 IPR013210 -
Car04g01222 1296 SMART LRR_sd22_2 284 309 - -
Car04g01222 1296 SMART LRR_sd22_2 678 693 - -
Car04g01222 1296 SMART LRR_sd22_2 824 845 - -
Car04g01222 1296 SMART LRR_sd22_2 750 776 - -
Car04g01222 1296 SMART LRR_sd22_2 848 874 - -
Car04g01222 1296 SMART LRR_sd22_2 163 189 - -
Car04g01222 1296 SMART LRR_sd22_2 236 262 - -
Car04g01222 1296 Pfam Leucine rich repeat 141 198 IPR001611 GO:0005515
Car04g01222 1296 Gene3D Ribonuclease Inhibitor 620 921 IPR032675 -
Car04g01222 1296 Gene3D Ribonuclease Inhibitor 210 358 IPR032675 -
Car04g01222 1296 ProSitePatterns Protein kinases ATP-binding region signature. 1023 1046 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g01222 Car-Chr4 12500343 12504450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g01222 55 1290 Receptor kinase-like Gene Family AT5G07280 59.098 0.0 1402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Car04g01222 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g01222 - - gmx:100780446 2096.24